Fix citations (about page and paper)

docs/about.md

@@ -4,39 +4,51 @@ Pyomeca is Apache-licensed and the source code is available on [GitHub](https://
 
 ## Citing Pyomeca
 
-If you use pyomeca in your academic work, please consider citing [our paper]() as:
+If you use pyomeca in your academic work, please consider citing [our paper](https://github.com/openjournals/joss-papers/blob/joss.02323/joss.02323/10.21105.joss.02323.pdf) as:
 
 ```bibtex
-@article{jos-pyomeca,
-    author = {author},
-    title = {title},
-    journal = {journal},
-    year = {year},
+@unpublished{Martinez2020,
+  doi = {},
+  url = {},
+  year = {2020},
+  publisher = {The Open Journal},
+  volume = {},
+  number = {},
+  pages = {},
+  author = {Romain Martinez and Benjamin Michaud and Mickael Begon},
+  title = {Pyomeca: An Open-Source Framework for Biomechanical Analysis},
+  journal = {Journal of Open Source Software}
 }
 ```
 
+!!! note
+
+    Our paper is currently under review.
+    You can follow the review process [here](https://github.com/openjournals/joss-reviews/issues/2323).
+    Once available, we will update the BibTex entry.
+
 Please consider citing the [xarray](https://openresearchsoftware.metajnl.com/articles/10.5334/jors.148/) project, which pyomeca is based on:
 
 ```bibtex
 @article{jors-xarray,
-title  = {Xarray: N-D labeled arrays and datasets in Python},
+title = {Xarray: N-D labeled arrays and datasets in Python},
 author = {Joe Hamman and Stephan Hoyer},
-year   = {2017},
-journal    = {Journal of Open Research Software}
+year = {2017},
+journal = {Journal of Open Research Software}
 }
 ```
 
-## Papers citing Pyomeca
+## Papers using Pyomeca
 
 - Blache, Yoann, Romain Martinez, Raphaël Dumas, Mickael Begon, Nicola Hagemeister, and Sonia Duprey. 2019. “[Chapter 20 - Motion Analysis and Modeling of the Shoulder: Challenges and Potential Applications.](https://www.sciencedirect.com/science/article/pii/B9780128167137000209)” In DHM and Posturography, edited by Sofia Scataglini and Gunther Paul, 261–271. Academic Press. doi:10.1016/B978-0-12-816713-7.00020-9.
 
-- Bouffard, Jason, Romain Martinez, André Plamondon, Julie N. Côté, and Mickaël Begon. 2019. “[Sex Differences in Glenohumeral Muscle Activation and Coactivation during a Box Lifting Task.](https://www.tandfonline.com/doi/abs/10.1080/00140139.2019.1640396)” Ergonomics 62 (10). Taylor & Francis: 1327–1338. doi:10.1080/00140139.2019.1640396.
+- Bouffard, Jason, Romain Martinez, André Plamondon, Julie N. Côté, and Mickaël Begon. 2019. “[Sex Differences in Glenohumeral Muscle Activation and Coactivation during a Box Lifting Task.](https://doi.org/10.1080/00140139.2019.1640396)” Ergonomics 62 (10). Taylor & Francis: 1327–1338. doi:10.1080/00140139.2019.1640396.
 
-- Martinez, Romain, Najoua Assila, Etienne Goubault, and Mickaël Begon. 2020. “[Sex Differences in Upper Limb Musculoskeletal Biomechanics during a Lifting Task.](https://www.sciencedirect.com/science/article/abs/pii/S0003687020300673)” Applied Ergonomics 86 (July): 103106. doi:10.1016/j.apergo.2020.103106.
+- Martinez, Romain, Najoua Assila, Etienne Goubault, and Mickaël Begon. 2020. “[Sex Differences in Upper Limb Musculoskeletal Biomechanics during a Lifting Task.](https://doi.org/10.1016/j.apergo.2020.103106)” Applied Ergonomics 86 (July): 103106. doi:10.1016/j.apergo.2020.103106.
 
-- Martinez, Romain, Jason Bouffard, Benjamin Michaud, André Plamondon, Julie N. Côté, and Mickaël Begon. 2019. “[Sex Differences in Upper Limb 3D Joint Contributions during a Lifting Task.](https://www.tandfonline.com/doi/abs/10.1080/00140139.2019.1571245)” Ergonomics 62 (5): 682–693. doi:10.1080/00140139.2019.1571245.
+- Martinez, Romain, Jason Bouffard, Benjamin Michaud, André Plamondon, Julie N. Côté, and Mickaël Begon. 2019. “[Sex Differences in Upper Limb 3D Joint Contributions during a Lifting Task.](https://doi.org/10.1080/00140139.2019.1571245)” Ergonomics 62 (5): 682–693. doi:10.1080/00140139.2019.1571245.
 
-- Assila Najoua, Claudio Pizzolato, Romain Martinez, David Lloyd, Mickael Begon. 2020. “Toward a physiological model of the shoulder: EMG-assisted algorithm to account for the muscle co-contraction.” Annals of Biomedical Engineering.
+- Assila Najoua, Claudio Pizzolato, Romain Martinez, David Lloyd, Mickael Begon. 2020. “[EMG-Assisted Algorithm to Account for Shoulder Muscles Co-Contraction in Overhead Manual Handling.](https://doi.org/10.3390/app10103522)” Applied Sciences.
 
 ## Contributors and support
 

docs/paper/paper.bib

@@ -5,7 +5,9 @@ @ARTICLE{Hoyer2017-sf
 volume =  5,
 pages = "304",
 month =  apr,
-year =  2017
+year =  2017,
+issn = "2049-9647",
+doi = "10.5334/jors.148"
 }
 
 @ARTICLE{Virtanen2020-zv,
@@ -17,17 +19,25 @@ @ARTICLE{Virtanen2020-zv
 pages = "261--272",
 month =  mar,
 year =  2020,
-language = "en"
+language = "en",
+issn = "1548-7091, 1548-7105",
+pmid = "32015543",
+doi = "10.1038/s41592-019-0686-2",
+pmc = "PMC7056644"
 }
 
-@INPROCEEDINGS{McKinney2010-pl,
-title = "Data structures for statistical computing in python",
-booktitle = "Proceedings of the 9th Python in Science Conference",
+@INPROCEEDINGS{McKinney2010-lm,
+title = "{D}ata {S}tructures for {S}tatistical {C}omputing in {P}ython",
+booktitle = "{P}roceedings of the 9th {P}ython in {S}cience {C}onference",
 author = "McKinney, Wes",
-volume =  445,
-pages = "51--56",
-institution = "Austin, TX",
-year =  2010
+publisher = "SciPy",
+pages = "56--61",
+series = "Proceedings of the Python in Science Conference",
+year =  2010,
+conference = "Python in Science Conference",
+location = "Austin, Texas",
+issn = "2575-9752",
+doi = "10.25080/Majora-92bf1922-00a"
 }
 
 @ARTICLE{Hunter2007-fv,
@@ -38,7 +48,9 @@ @ARTICLE{Hunter2007-fv
 number =  3,
 pages = "90--95",
 month =  may,
-year =  2007
+year =  2007,
+issn = "1558-366X",
+doi = "10.1109/MCSE.2007.55"
 }
 
 @ARTICLE{Walt2011-em,
@@ -50,7 +62,9 @@ @ARTICLE{Walt2011-em
 number =  2,
 pages = "22--30",
 month =  mar,
-year =  2011
+year =  2011,
+issn = "1521-9615",
+doi = "10.1109/MCSE.2011.37"
 }
 
 @ARTICLE{Dixon2017-co,
@@ -60,22 +74,32 @@ @ARTICLE{Dixon2017-co
 volume =  140,
 pages = "1--10",
 month =  mar,
-year =  2017
+year =  2017,
+issn = "0169-2607",
+doi = "10.1016/j.cmpb.2016.11.007"
 }
 
-@ARTICLE{Muller2019-vd,
+@ARTICLE{Muller2019-cx,
 title = "{CusToM}: a Matlab toolbox for musculoskeletal simulation",
 author = "Muller, Antoine and Pontonnier, Charles and Puchaud, Pierre and Dumont, Georges",
-publisher = "hal.inria.fr",
-year =  2019
+journal = "JOSS",
+volume =  4,
+number =  33,
+pages = "927",
+month =  jan,
+year =  2019,
+issn = "2475-9066",
+doi = "10.21105/joss.00927"
 }
 
 @ARTICLE{Hachaj2019-tk,
 title = "{RMoCap}: an {R} language package for processing and kinematic analyzing motion capture data",
 author = "Hachaj, Tomasz and Ogiela, Marek R",
 journal = "Multimedia Systems",
 month =  aug,
-year =  2019
+year =  2019,
+issn = "1432-1882",
+doi = "10.1007/s00530-019-00633-9"
 }
 
 @ARTICLE{Hatze1974-zc,
@@ -87,7 +111,10 @@ @ARTICLE{Hatze1974-zc
 pages = "189--190",
 month =  mar,
 year =  1974,
-language = "en"
+language = "en",
+issn = "0021-9290",
+pmid = "4837555",
+doi = "10.1016/0021-9290(74)90060-8"
 }
 
 @INPROCEEDINGS{Rasmussen2003-yv,
@@ -108,4 +135,4 @@ @misc{ezc3d
 publisher = {GitHub},
 journal = {GitHub repository},
 url = {https://github.com/pyomeca/ezc3d}
-}
+}

docs/paper/paper.md

@@ -31,7 +31,7 @@ The processing, analysis and visualization of these data could therefore be unif
 Most biomechanical data characterizing human and animal movement appear as temporal waveforms representing specific measures such as muscle activity or joint angles.
 These data are typically multidimensional arrays structured around labels with arbitrary metadata (\autoref{fig:biomech-data}).
 Existing software solutions share some limitations.
-Some of them are not free of charge [@Rasmussen2003-yv] or based on closed-source programming language [@Dixon2017-co; @Muller2019-vd].
+Some of them are not free of charge [@Rasmussen2003-yv] or based on closed-source programming language [@Dixon2017-co; @Muller2019-cx].
 Others do not leverage labels and metadata [@Walt2011-em; @Hachaj2019-tk; @Virtanen2020-zv].
 `pyomeca` is a python package designed to address these limitations.
 
@@ -126,7 +126,7 @@ emg_dataframe = emg_processed.meca.to_wide_dataframe()
 emg_dataframe.plot.box(showfliers=False)
 ```
 
-![`pyomeca` offers a method to convert the data structure into a `pandas` dataframe [@McKinney2010-pl].
+![`pyomeca` offers a method to convert the data structure into a `pandas` dataframe [@McKinney2010-lm].
 This allows users to further extend the plot possibilities using the visualization built into `pandas` itself, such as boxplot.\label{fig:ex-4-box}](fig/ex-4-box.pdf)
 
 ```python