start of reorg branch

MANIFEST.in

@@ -1,2 +1 @@
-include authors.txt INSTALL.txt LICENSE.txt THANKS.txt CHANGELOG.txt MANIFEST.in pysal/COPYING requirements_dev.txt requirements_plus.txt requirements.txt
-
+include *.txt

pysal/__init__.py

@@ -1,165 +0,0 @@
-"""
-Python Spatial Analysis Library
-===============================
-
-
-Documentation
--------------
-PySAL documentation is available in two forms: python docstrings and an html \
-        webpage at http://pysal.org/
-
-Available sub-packages
-----------------------
-
-cg
-    Basic data structures and tools for Computational Geometry
-core
-    Basic functions used by several sub-packages
-esda
-    Tools for Exploratory Spatial Data Analysis
-examples
-    Example data sets used by several sub-packages for examples and testing
-network
-    Spatial analysis on networks
-region
-    Regionalization algorithms and spatially constrained clustering
-spatial_dynamics
-    Space-time exploratory methods and clustering
-spreg
-    Spatial regression and econometrics
-weights
-    Tools for creating and manipulating weights
-contrib
-    Package for interfacing with third-party libraries
-
-Utilities
----------
-`fileio`_
-    Tool for file input and output, supports many well known file formats
-"""
-import pysal.cg
-import pysal.core
-
-try:
-    import pandas
-    from pysal.contrib import pdio
-    pysal.common.pandas = pandas
-except ImportError:
-    pysal.common.pandas = None
-
-# Load the IOHandlers
-from pysal.core import IOHandlers
-# Assign pysal.open to dispatcher
-open = pysal.core.FileIO.FileIO
-
-from pysal.version import version
-#from pysal.version import stable_release_date
-#import urllib2, json
-#import config
-#import datetime
-#import os, sys
-
-# toplevel imports to be explicit
-from pysal.esda.moran import Moran, Moran_BV, Moran_BV_matrix, Moran_Local, Moran_Local_BV
-from pysal.esda.geary import Geary
-from pysal.esda.join_counts import Join_Counts
-from pysal.esda.gamma import Gamma
-from pysal.esda.getisord import G, G_Local
-from pysal.esda.mapclassify import quantile, binC, bin, bin1d, Equal_Interval, \
-    Percentiles
-from pysal.esda.mapclassify import Box_Plot, Quantiles, Std_Mean, Maximum_Breaks
-from pysal.esda.mapclassify import Natural_Breaks, Fisher_Jenks, Jenks_Caspall
-from pysal.esda.mapclassify import Jenks_Caspall_Sampled, Jenks_Caspall_Forced
-from pysal.esda.mapclassify import User_Defined, Max_P_Classifier, gadf
-from pysal.esda.mapclassify import K_classifiers
-from pysal.inequality.theil import Theil, TheilD, TheilDSim
-from pysal.region.maxp import Maxp, Maxp_LISA
-from pysal.spatial_dynamics import Markov, Spatial_Markov, LISA_Markov, \
-    SpatialTau, Theta, Tau
-from pysal.spatial_dynamics import ergodic
-from pysal.spatial_dynamics import directional
-from pysal.weights import W, lat2W, block_weights, comb, full, shimbel, \
-    order, higher_order, higher_order_sp, remap_ids, hexLat2W, WSP, regime_weights
-from pysal.weights.Distance import knnW, Kernel, DistanceBand
-from pysal.weights.Contiguity import buildContiguity
-from pysal.weights.spatial_lag import lag_spatial
-from pysal.weights.Wsets import w_union, w_intersection, w_difference
-from pysal.weights.Wsets import w_symmetric_difference, w_subset
-from pysal.weights.user import queen_from_shapefile, rook_from_shapefile, \
-    knnW_from_array, knnW_from_shapefile, threshold_binaryW_from_array,\
-    threshold_binaryW_from_shapefile, threshold_continuousW_from_array,\
-    threshold_continuousW_from_shapefile, kernelW, kernelW_from_shapefile,\
-    adaptive_kernelW, adaptive_kernelW_from_shapefile,\
-    min_threshold_dist_from_shapefile, build_lattice_shapefile
-from pysal.core.util.weight_converter import weight_convert
-import pysal.spreg
-import pysal.examples
-from pysal.network.network import Network, NetworkG, NetworkK, NetworkF
-
-#__all__=[]
-#import esda,weights
-#__all__+=esda.__all__
-#__all__+=weights.__all__
-
-# Constants
-MISSINGVALUE = None  # used by fileIO to flag missing values.
-
-# Load stale and other possible messages at import
-
-"""
-base_path = os.path.split(pysal.__file__)[0]
-config_path = os.path.join(base_path, 'config.py')
-
-def query_yes_no(question):
-    yes = set(['yes','y', 'ye', ''])
-    no = set(['no','n'])
-    while True:
-        sys.stdout.write(question)
-        choice = raw_input().lower()
-        if choice in yes:
-            turn_off_check()
-            break
-        elif choice in no:
-            break
-        else:
-            sys.stdout.write("Please respond with 'yes' or 'no'.\n")
-
-def turn_off_check():
-    if os.path.isfile(config_path):
-        f = open(config_path, 'w')
-        f.write("check_stable=False")
-        f.close()
-        pass
-    else:
-        print('Cannot find config.py. Please set value manually.')
-
-def check_version():
-    today = datetime.date.today()
-    delta = datetime.timedelta(days=180)
-    diff = (today - stable_release_date).days
-    releases = int(diff)/180
-    if today - delta > stable_release_date:
-	    print("Your version of PySAL is %d days old.") % diff 
-	    print("There have likely been %d new release(s).") % releases 
-	    print("Suppress this by setting check_stable=False in config.py.")  
-	    #query_yes_no("Disable this check? [Y/n]")
-    else:
-        pass
-
-def check_remote_version():
-    print("Checking web for last stable release....")
-    try:
-        url = 'http://pypi.python.org/pypi/pysal/json'
-        request = urllib2.urlopen(url)
-        data = json.load(request)
-        newest = data['info']['version']
-        late = 'The most recent stable release is %s.' %newest
-        print(late)
-    except:
-        print("Machine is offline. I am unable to check for the latest version of PySAL")
-
-if config.check_stable:
-    check_version()
-else:
-    pass
-"""

pysal/api.py

@@ -0,0 +1,3 @@
+from esda import moran
+import libpysal.api as ps
+from spvcm import api as vcm