Sample Status Updater CLI

Command-line utility to track the first status and location of newly registered samples.

How to run

Create a runable version of this code with maven and java 8:

> mvn clean package

The JAR file will be created in the /target folder, for example:

|-target
|---sample-status-updater-cli-1.0.0.jar
|---...

Run the application with:

> java -jar sample-status-updater-cli-1.0.0.jar -h
Usage: OpenBIS status updater [-hv] -c=<config>
Command-line utility to...
  -c, --config=<config>   Property file in JSON to run the sample status updater.
  -h, --help              Prints usage and exists.
  -v, --version           Prints version and exits.

Configuration

Properties

You have to provide a property file, that has to contain the following fields:

{
    "openbisAsUrl": "https://base/url",
    "openbisUser": "theuser",
    "openbisPw": "thepassword", 
    "serviceRegistryUrl": "http://test-registry.local:8500/v1",
    "serviceUser": "serviceUserName",
    "serviceUserPw": "theservicepassword",
    "lastSearchTimePoint": 2022-01-27T17:10:04.504Z"
}

The application currently tries to automatically update the lastSearchDate property, so it needs to have write permissions.

How to use

Deploy the service on the desired server and run it with a cron job regularly. Make sure the defined service address can be accessed. In the QBiC realm it will be the sample-tracking-service.

License

This work is licensed under the MIT license.