1.1.0 - The Proline Depot

Added

• #57 Add GitHub Actions to create and publish Docker image
• #50 Add Database interface for PostgreSQL (#37, #38)
• #50 Use Micronaut Data
• #50 Factory classes for entities
• #52 Transaction repository for MariaDB
• #53 Ensembl gene import for PostgreSQL
• #58 Server-side view for Variantstore status
• #59 Documentation on OAuth 2.0 configuration
• #62 Endpoint/Controller for project entity

Changed

• #50 Update Micronaut version to 3.x
• #50 Use Testcontainers for tests
• #50 Use Flyway for database migration
• #50 Adapt configuration to work with MariaDB OR PostgreSQL
• #55, #56 Extend documentation
• #64 Update dependencies, remove log4j

Fixed

• #52 Transaction registration during VCF import
• #59 OAuth 2.0 configuration
• #61 Variant import bug (#60)

See CHANGELOG for more information.

1.0.1 - Valmart (Patch)

Added

Changed

• Extend usage documentation and add examples
• #43 - Prevent the creation of duplicate gene entries in the database (#40)

Fixed

• #43 - Fix parsing of Ensembl version (#42)
• #43 - Fix EnsemblParser bug caused by missing Gene constructor (#41)

See CHANGELOG for more information.

1.0.0 - Valmart

Initial release of Variantstore.

Main features

• Store genomic variants with associated metadata
• Import genomic variants in Variant Call Format
• Export genomic variants from the store in JSON, FHIR, and Variant Call Format
• Query the store for genomic variants and metadata through defined REST endpoints

See CHANGELOG for more information.