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Add countries to metadata getter #653

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merged 1 commit into from Mar 22, 2014
Merged

Add countries to metadata getter #653

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30 changes: 28 additions & 2 deletions database/procedures/ag_get_barcode_metadata.sql
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Expand Up @@ -17,7 +17,7 @@ select akb.barcode as sample_name,
'American Gut Project ' || akb.site_sampled || ' sample' as DESCRIPTION,
akb.sample_time,
0 as altitude,
'n' as assigned_from_geo,
'y' as assigned_from_geo,
'American Gut Project' as TITLE,
case akb.site_sampled
when 'Please select...' then 'unknown'
Expand Down Expand Up @@ -158,10 +158,36 @@ select akb.barcode as sample_name,
when lower(country) = 'united states of america' then 'GAZ:United States of America'
when lower(country) = 'us' then 'GAZ:United States of America'
when lower(country) = 'usa' then 'GAZ:United States of America'
when lower(country) = 'u.s.a' then 'GAZ:United States of America'
when lower(country) = 'u.s.' then 'GAZ:United States of America'
when lower(country) = 'canada' then 'GAZ:Canada'
when lower(country) = 'canadian' then 'GAZ:Canada'
when lower(country) = 'ca' then 'GAZ:Canada'
when lower(country) = 'australia' then 'GAZ:Australia'
when lower(country) = 'au' then 'GAZ:Australia'
when lower(country) = 'united kingdom' then 'GAZ:United Kingdom'
when lower(country) = 'belgium' then 'GAZ:Belgium'
when lower(country) = 'gb' then 'GAZ:Great Britain'
when lower(country) = 'korea, republic of' then 'GAZ:South Korea'
when lower(country) = 'nl' then 'GAZ:Netherlands'
when lower(country) = 'netherlands' then 'GAZ:Netherlands'
when lower(country) = 'spain' then 'GAZ:Spain'
when lower(country) = 'es' then 'GAZ:Spain'
when lower(country) = 'norway' then 'GAZ:Norway'
else lower(country)
when lower(country) = 'germany' then 'GAZ:Germany'
when lower(country) = 'de' then 'GAZ:Germany'
when lower(country) = 'china' then 'GAZ:China'
when lower(country) = 'singapore' then 'GAZ:Singapore'
when lower(country) = 'new zealand' then 'GAZ:New Zealand'
when lower(country) = 'france' then 'GAZ:France'
when lower(country) = 'fr' then 'GAZ:France'
when lower(country) = 'ch' then 'GAZ:Switzerland'
when lower(country) = 'switzerland' then 'GAZ:Switzerland'
when lower(country) = 'denmark' then 'GAZ:Denmark'
when lower(country) = 'scotland' then 'GAZ:Scotland'
when lower(country) = 'united arab emirates' then 'GAZ:United Arab Emirates'
when lower(country) = 'ireland' then 'GAZ:Ireland'
else 'unknown'
end as country,
case
when al.latitude is null then 'unknown'
Expand Down