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ENH: Adds discard_untrimmed to trim methods #29

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merged 2 commits into from Mar 27, 2019
Merged

ENH: Adds discard_untrimmed to trim methods #29

merged 2 commits into from Mar 27, 2019

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thermokarst
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Fixes #10

This still needs a tire-kicking. ☸️

@thermokarst thermokarst added this to In Review in 2019.4 via automation Mar 27, 2019
@thermokarst thermokarst changed the title ENH: Adds discard_untrimmed to filter methods ENH: Adds discard_untrimmed to trim methods Mar 27, 2019
@nbokulich nbokulich self-assigned this Mar 27, 2019
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Looks good @thermokarst . I pulled down and tire kicking was a success.

Looks like the parameter descriptions need a little tweak, see per-line comments. Otherwise this is ready to go.

Also: it looks like this method can output empty artifacts. Something to consider if you want to output trimmed and untrimmed together now.

q2_cutadapt/plugin_setup.py Outdated Show resolved Hide resolved
q2_cutadapt/plugin_setup.py Outdated Show resolved Hide resolved
q2_cutadapt/tests/test_trim.py Show resolved Hide resolved
@thermokarst thermokarst assigned thermokarst and unassigned nbokulich Mar 27, 2019
@thermokarst thermokarst moved this from In Review to In Development in 2019.4 Mar 27, 2019
@thermokarst thermokarst assigned nbokulich and unassigned thermokarst Mar 27, 2019
@thermokarst thermokarst moved this from In Development to In Review in 2019.4 Mar 27, 2019
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👍

@nbokulich nbokulich merged commit 16819d7 into qiime2:master Mar 27, 2019
2019.4 automation moved this from In Review to Completed Mar 27, 2019
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2 participants