making Mr Linter happy

qiime2 · Aug 29, 2020 · aa0223a · aa0223a
1 parent 5b27b83
commit aa0223a
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Showing 4 changed files with 23 additions and 2 deletions.
diff --git a/q2_gneiss/composition/_composition.py b/q2_gneiss/composition/_composition.py
@@ -82,7 +82,7 @@
             'tree': Phylogeny[Rooted]},
     outputs=[('ordination', PCoAResults),
              ('clade_metadata', CladeMetadata),
-             ('hierarchy', Hierarchy)],
+             ('bifurcated_tree', Phylogeny[Rooted])],
     parameters={'pseudocount': Float,
                 'top_k_var': Int,
                 'clades': List[Str]},
@@ -109,6 +109,6 @@
         'ordination': ('The resulting ordination from the '
                        'ilr transform.'),
         'clade_metadata': ('Metadata specifying clade membership.'),
-        'hierarchy': 'Hierarchy from bifurcated phylogeny'},
+        'bifurcated_tree': 'Bifurcating phylogeny'},
     description="Compute an ILR ordination given a rooted phylogeny."
 )
diff --git a/q2_gneiss/composition/_format.py b/q2_gneiss/composition/_format.py
@@ -1,3 +1,10 @@
+# ----------------------------------------------------------------------------
+# Copyright (c) 2017-2020, QIIME 2 development team.
+#
+# Distributed under the terms of the Modified BSD License.
+#
+# The full license is in the file LICENSE, distributed with this software.
+# ----------------------------------------------------------------------------
 import qiime2
 import qiime2.plugin.model as model
 from qiime2.plugin import ValidationError

diff --git a/q2_gneiss/composition/_transformer.py b/q2_gneiss/composition/_transformer.py
@@ -1,3 +1,10 @@
+# ----------------------------------------------------------------------------
+# Copyright (c) 2017-2020, QIIME 2 development team.
+#
+# Distributed under the terms of the Modified BSD License.
+#
+# The full license is in the file LICENSE, distributed with this software.
+# ----------------------------------------------------------------------------
 from ._format import CladeMetadataFormat
 from ..plugin_setup import plugin
 import pandas as pd

diff --git a/q2_gneiss/composition/_type.py b/q2_gneiss/composition/_type.py
@@ -1,3 +1,10 @@
+# ----------------------------------------------------------------------------
+# Copyright (c) 2017-2020, QIIME 2 development team.
+#
+# Distributed under the terms of the Modified BSD License.
+#
+# The full license is in the file LICENSE, distributed with this software.
+# ----------------------------------------------------------------------------
 from qiime2.plugin import SemanticType
 from ..plugin_setup import plugin
 from q2_types.feature_data import FeatureData