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This would be useful to use principal coordinates (or other ordination results) as input metadata. I am working on some methods that could employ this, e.g., to test whether samples change over PC1 before/after treatment.
The transformation of OrdinationFormat --> pd.DataFrame can be achieved with something like this (in a jupyter notebook, at least. I suppose the first line might be unnecessary in a transformer):
This would be useful to use principal coordinates (or other ordination results) as input metadata. I am working on some methods that could employ this, e.g., to test whether samples change over PC1 before/after treatment.
The transformation of OrdinationFormat --> pd.DataFrame can be achieved with something like this (in a jupyter notebook, at least. I suppose the first line might be unnecessary in a transformer):
and then I assume the
beta_div
DataFrame can be converted to metadata withI would find this extremely useful — any interest?
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