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BUG: Taxa formats whitespace and comments #219

Merged
merged 7 commits into from
Aug 8, 2019
Merged

BUG: Taxa formats whitespace and comments #219

merged 7 commits into from
Aug 8, 2019

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David-Rod
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@David-Rod David-Rod commented Jul 15, 2019

This PR allows for items that follow a '#' or ' #' in tsv files to remain in the file, instead of being seen as a comment. This PR is related to issue #179.

Issue #174 also pertains to a white space issue regarding ID's and taxonomic data that follows a space. This may be relevant to this PR, which would result in further commits.

@thermokarst thermokarst added this to In Review in 2019.7 via automation Jul 16, 2019
@thermokarst thermokarst self-requested a review July 24, 2019 12:59
@thermokarst thermokarst self-assigned this Jul 24, 2019
@thermokarst thermokarst changed the title MAINT: Addressed comment issue which removed data that followed a '#'… BUG: Handle whitespace in TSVTaxonomyFormat Jul 26, 2019
@thermokarst thermokarst changed the title BUG: Handle whitespace in TSVTaxonomyFormat BUG: Taxa formats whitespace and comments Jul 26, 2019
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Thanks @Davrod29, this is going to be super cool to have! I have a few questions and comment, inline, please take a look and let me know what you think! 🎋

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@thermokarst thermokarst assigned David-Rod and unassigned thermokarst Jul 26, 2019
@thermokarst thermokarst moved this from In Review to In Development in 2019.7 Jul 26, 2019
@thermokarst thermokarst removed this from In Development in 2019.7 Jul 29, 2019
@thermokarst thermokarst added this to In Review in 2019.10 Aug 2, 2019
@thermokarst thermokarst assigned thermokarst and unassigned David-Rod Aug 6, 2019
@thermokarst thermokarst assigned David-Rod and unassigned thermokarst Aug 6, 2019
@thermokarst thermokarst moved this from In Review to In Development in 2019.10 Aug 6, 2019
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Also, you will need to update _format.py to remove the comment-line checks in the sniffer.

q2_types/feature_data/_transformer.py Outdated Show resolved Hide resolved
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@thermokarst thermokarst moved this from In Development to In Review in 2019.10 Aug 7, 2019
@thermokarst thermokarst assigned thermokarst and unassigned David-Rod Aug 7, 2019
@thermokarst thermokarst moved this from In Review to In Development in 2019.10 Aug 7, 2019
@thermokarst thermokarst assigned David-Rod and unassigned thermokarst Aug 7, 2019
@thermokarst thermokarst merged commit cf45830 into qiime2:master Aug 8, 2019
2019.10 automation moved this from In Development to Changelog Needed Aug 8, 2019
@David-Rod David-Rod moved this from Changelog Needed to Completed in 2019.10 Aug 30, 2019
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