Analysis refactor sync w master 2 (#2141)

* fix #1505

* improving some GUI stuff

* improving some GUI stuff - missing lines

* addressing all comments

* ready for review

* fix #1987

* initial commit

* requested changes

* fix filter job list

* Fixing server cert (#2051)

* fix get_studies

* flake8

* fix #503

* fix #2010

* fix #1913

* fix errors

* addressing @josenavas comment

* flake8

* fix #1010

* fix #1066 (#2058)

* addressing @josenavas comments

* fix #1961

* fix #1837

* Automatic jobs & new stats (#2057)

* fix #814, fix #1636

* fixing error in test-env

* fixing stats.html call

* adding img

* addressing @josenavas comments

* rm for loops

* addresssing @ElDeveloper comments

* generalizing this functionality

* fix #1805

* adding button

* fix errors

* fix #1816

* fixing failures tests

* fix #1959

* addressing @josenavas comments

* addressing @josenavas comments

* fixing error

* fixed?

* addressing @josenavas comments

* addressing @wasade comments

* fix flake8

* generate biom and metadata release (#2066)

* initial commit

* adding portal

* addressing @josenavas comments

* pid -> qiita_artifact_id

* addressing @josenavas comments

* addressing @ElDeveloper comments

* rm 50.sql

* database changes to fix 969

* adding delete

* addressing @josenavas comments

* addressing @ElDeveloper comments

* duh!

* fix generate_biom_and_metadata_release (#2072)

* fix generate_biom_and_metadata_release

* addressing @ElDeveloper comment

* fixing timestamp

* rm formats

* st -> pt

* moving to ISO 8601 - wow :'(

* fix errors

* addressing @wasade comments

* fixing private/public studies

* sanbox-to-sandbox

* flake8

* fixing other issues

* adding share documentation

* psycopg2 <= 2.7

* psycopg2 < 2.7

* init commit

* fixing errors

* fixing errors due to update

* Making the download work

* Fixing tests

* working status

* adding tags, the right way!

* fix error

* Addressing @antgonza's comments

* Adding missing test

* Ignoring tgz - thanks @antgonza

* addressing @josenavas comments

* list study tags

* fix error

* adding tags to public

* adding docs

* addressing @wasade comment

* addressing @josenavas and @wasade comments

* addressing @wasade request

* fix #2091

* option 2: @ElDeveloper and @josenavas

* A minimal REST API for Qiita (#2094)

* TST: Add initial test cases for study handler

* ENH: Add initial study rest api

* API: test if a study exists

* ENH: oauth2 forced

* Get back basic study deets

* TST: test for samples collection

* API: rest get sample IDs from a study

* ENH: samples/info handler

* broken routes

* API: request sample metadata

* ENH/API: Add methods to check for a study person

* ENH/API: Add POST methods for study person

* TST: Add tests for from_name_and_affiliation

* TST: study creation

* BUG: Add headers to tests

* ENH: create study

* Adjust GET on study description

* API: Add endpoints for preparation creation

* TST: 200 :D

* TST: Correctly verify study instantiation

* TST: prep artifact creation

* ENH/API: associate artifacts with a preparation

* TST: test study statys

* ENH: study status

* Removed trailing whitespace

* STY: PEP8

* MAINT: refactor, centralize setup boilerplate

* REFACTOR: Remove repeated code

* DOC: Remove unnecessary comments

* REFACTOR: Missing removal of pattern

* STY: Fix PEP8 errors

* BUG: Incorrectly changed error code

* BUG/TST: Fix typo in tests

* Addressing an @antgonza comment

* Another @antgonza comment

* RVW: Address review comments

* ENH: Cleanup webserver and name-spaces

* ENH: Improve error messages

* ENH: Add more descriptive error message

* TST: Exercise different argument types

* DOC: Add documentation for REST API

* ENH: Remove extra comma

* ENH/DOC: update/add samples to sample information via rest (#2097)

* Changing how artifact visibility works (#2098)

* changing how artifact visibility works

* fixing code

* fix errors

* fixing edit check access

* fix

* fix #2086

* flak8

* addressing @ElDeveloper comments + fixes

* adding the final changes

* fix failures

* get_qiita_version -> generate_biom_and_metadata_release

* download raw data

* adding missing empty files

* Adding endpoint to retrieve list of person (#2103)

* Adding missing endpoint

* Addressing @ElDeveloper comment

* fix #2086 (#2102)

* fix #2086

* flak8

* addressing @ElDeveloper comments + fixes

* adding the final changes

* fix failures

* get_qiita_version -> generate_biom_and_metadata_release

* addressing @wasade comments and fix errors

* fix error?

* rm vfabu + addressing @wasade and @josenavas comments + fix errors

* just being dumb!

* Deblur quality mention (#2107)

* Revised rst values used for section headers (#2108)

* Fixing latlongs (#2120)

* public studies are being shown in the user own studies

* fix #2069 - adding tests

* flake8

* Improving study list speed (#2123)

* init commit

* reading if ...

* fixing tests

* rethinking listint

* split SQL

* reseting sql

* ignoring prep_total_samples

* finishing changes

* adding comment: @ElDeveloper

* adding message: @josenavas

* addressing @ElDeveloper, @josenavas @jdereus comments

* fixing download buttons show (#2127)

* fixing download buttons show

* addressing @ElDeveloper comment

* connecting tutorials to CMI

* adding link in main page

* fixing prep getting-started

* mv complex designs

* fix idents

* limiting number of jobs retrieved

qiita_pet/webserver.py

@@ -28,10 +28,10 @@
     CreateStudyAJAX, ShareStudyAJAX, StudyApprovalList, ArtifactGraphAJAX,
     VAMPSHandler, PrepTemplateGraphAJAX, StudyTags, StudyGetTags,
     ListCommandsHandler, ListOptionsHandler, PrepTemplateSummaryAJAX,
-    PrepTemplateAJAX, NewArtifactHandler, SampleAJAX,
-    StudyDeleteAjax, ArtifactAdminAJAX,
-    NewPrepTemplateAjax, DataTypesMenuAJAX, StudyFilesAJAX, ArtifactGetSamples,
-    WorkflowHandler, WorkflowRunHandler, JobAJAX, AutocompleteHandler)
+    PrepTemplateAJAX, NewArtifactHandler, SampleAJAX, StudyDeleteAjax,
+    ArtifactAdminAJAX, NewPrepTemplateAjax, DataTypesMenuAJAX, StudyFilesAJAX,
+    ArtifactGetSamples, WorkflowHandler, WorkflowRunHandler, JobAJAX,
+    AutocompleteHandler)
 from qiita_pet.handlers.artifact_handlers import (
     ArtifactSummaryAJAX, ArtifactAJAX, ArtifactSummaryHandler,
     ProcessArtifactHandler)