Using the concept of informative genomic segment to investigate microbial diversity of metagenomics sample
For a introduction: http://nbviewer.ipython.org/github/qingpeng/2013-diversity/blob/master/notebook/2013-diversity-summary.ipynb
/Notebook/ http://nbviewer.ipython.org/github/qingpeng/2013-diversity/tree/master/notebook/
/Manuscript Manuscript
General Repo
Including:
Comparison of metagenomics samples Diversity estimation of metagenomics samples
Basic testing: Theory research: Simulated testing data:
Testing data sets: GOS data
Excluding: Real data sets:
GPGC data Virus data
Including: Temporary: Jiarong's data