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1. VenmoPlus VenmoPlus Public

   An Insight Data Engineering Project using Spark, Kafka, ElasticSearch, Redis, Flask, AngularJS

   Python 3 1

2. igs-diversity igs-diversity Public

   microbial diversity analysis package based on IGS for whole-genome shotgun metagenomic data

   Python 2

3. jgi-ViCA jgi-ViCA Public

   Classifying virus DNA sequences using large scale machine learning with Apache Spark

   Jupyter Notebook 3

4. dib-lab/khmer dib-lab/khmer Public

   In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

   Python 756 296

5. dib-lab/2013-khmer-counting dib-lab/2013-khmer-counting Public

   Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

   Jupyter Notebook 10 14

6. USDA-ARS-GBRU/vica USDA-ARS-GBRU/vica Public

   Vica: Software to identify highly divergent DNA and RNA viruses and phages in microbiomes

   Python 5 5