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| # hav 400bp v1.0.0 | ||
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| ## Description | ||
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| A PrimerScheme for Human hepatitis A virus (HAV) | ||
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| ## Overviews | ||
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|  | ||
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| ## Details | ||
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| ```json | ||
| { | ||
| "ampliconsize": 400, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "hav", | ||
| "primer_bed_md5": "5c8028df8ad1847cfd2cb8d57af15ea0", | ||
| "reference_fasta_md5": "06055c7be5786153302d83faa7b5304e", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "Chris Kent", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3:1.1.5", | ||
| "species": [ | ||
| 208726 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v1.3.0", | ||
| "articbedversion": "v3.0", | ||
| "description": "A PrimerScheme for Human hepatitis A virus (HAV)", | ||
| "derivedfrom": null, | ||
| "collections": [ | ||
| "WHOLE-GENOME", | ||
| "QUICK-LAB", | ||
| "MODJADJI", | ||
| "WASTE-WATER" | ||
| ] | ||
| } | ||
| ``` | ||
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| ------------------------------------------------------------------------ | ||
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| This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/) | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| { | ||
| "ampliconsize": 400, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "hav", | ||
| "primer_bed_md5": "5c8028df8ad1847cfd2cb8d57af15ea0", | ||
| "reference_fasta_md5": "06055c7be5786153302d83faa7b5304e", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "Chris Kent", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3:1.1.5", | ||
| "species": [ | ||
| 208726 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v1.3.0", | ||
| "articbedversion": "v3.0", | ||
| "description": "A PrimerScheme for Human hepatitis A virus (HAV)", | ||
| "derivedfrom": null, | ||
| "collections": [ | ||
| "WHOLE-GENOME", | ||
| "QUICK-LAB", | ||
| "MODJADJI", | ||
| "WASTE-WATER" | ||
| ] | ||
| } |
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| >NC_001489.1 | ||
| TTCAAGAGGGGTCTCCGGGAATTTCCGGAGTCCCTCTTGGAAGTCCATGGTGAGGGGACT | ||
| TGATACCTCACCGCCGTTTGCCTAGGCTATAGGCTAAATTTTCCCTTTCCCTTTTCCCTT | ||
| TCCTATTCCCTTTGTTTTGCTTGTAAATATTAATTCCTGCAGGTTCAGGGTTCTTAAATC | ||
| TGTTTCTCTATAAGAACACTCATTTTTCACGCTTTCTGTCTTCTTTCTTCCAGGGCTCTC | ||
| CCCTTGCCCTAGGCTCTGGCCGTTGCGCCCGGCGGGGTCAACTCCATGATTAGCATGGAG | ||
| CTGTAGGAGTCTAAATTGGGGACACAGATGTTTGGAACGTCACCTTGCAGTGTTAACTTG | ||
| GCTTTCATGAATCTCTTTGATCTTCCACAAGGGGTAGGCTACGGGTGAAACCTCTTAGGC | ||
| TAATACTTCTATGAAGAGATGCCTTGGATAGGGTAACAGCGGCGGATATTGGTGAGTTGT | ||
| TAAGACAAAAACCATTCAACGCCGGAGGACTGACTCTCATCCAGTGGATGCATTGAGTGG | ||
| ATTGACTGTCAGGGCTGTCTTTAGGCTTAATTCCAGACCTCTCTGTGCTTAGGGCAAACA | ||
| TCATTTGGCCTTAAATGGGATTCTGTGAGAGGGGATCCCTCCATTGACAGCTGGACTGTT | ||
| CTTTGGGGCCTTATGTGGTGTTTGCCTCTGAGGTACTCAGGGGCATTTAGGTTTTTCCTC | ||
| ATTCTTAAATAATAATGAACATGTCTAGACAAGGTATTTTCCAGACTGTTGGGAGTGGTC | ||
| TTGACCACATCCTGTCTTTGGCAGACATTGAGGAAGAGCAAATGATTCAATCAGTTGATA | ||
| GGACTGCAGTGACTGGTGCTTCTTATTTTACTTCTGTGGATCAATCTTCAGTTCATACAG | ||
| CTGAGGTTGGATCACACCAGGTTGAACCTTTGAGAACCTCTGTTGATAAACCCGGTTCAA | ||
| AGAAGACTCAGGGAGAGAAATTTTTCTTGATTCATTCTGCAGATTGGCTTACTACACATG | ||
| CTCTTTTCCATGAAGTTGCAAAATTGGATGTGGTGAAATTATTATACAATGAGCAGTTTG | ||
| CTGTTCAAGGGTTGTTGAGATACCATACATATGCAAGATTTGGCATTGAAATTCAAGTTC | ||
| AGATAAACCCTACACCTTTCCAACAGGGGGGATTGATCTGTGCTATGGTTCCTGGTGACC | ||
| AGAGCTATGGTTCTATAGCATCATTGACTGTTTATCCTCATGGTTTGTTAAATTGCAATA | ||
| TTAACAATGTGGTTAGAATAAAGGTTCCATTTATTTACACAAGAGGTGCTTACCACTTTA | ||
| AAGATCCACAATACCCAGTTTGGGAATTGACAATTAGAGTTTGGTCAGAATTAAATATTG | ||
| GGACAGGAACTTCAGCTTATACTTCACTCAATGTTTTAGCTAGATTTACAGATTTGGAGT | ||
| TGCATGGATTAACTCCTCTTTCTACACAAATGATGAGAAATGAATTTAGGGTCAGTACTA | ||
| CTGAGAATGTGGTGAATCTGTCAAATTATGAAGATGCAAGAGCAAAGATGTCTTTTGCTT | ||
| TGGATCAGGAAGATTGGAAATCTGATCCGTCCCAGGGTGGTGGGATCAAAATTACTCATT | ||
| TTACTACTTGGACATCTATTCCAACTTTGGCTGCTCAGTTTCCATTTAATGCTTCAGACT | ||
| CAGTTGGTCAACAAATTAAAGTTATTCCAGTTGACCCATATTTTTTCCAAATGACAAATA | ||
| CGAATCCTGACCAAAAATGTATAACTGCTTTGGCTTCTATTTGTCAGATGTTTTGTTTTT | ||
| GGAGAGGAGATCTTGTCTTTGATTTTCAAGTTTTTCCCACCAAATATCATTCAGGTAGAT | ||
| TACTGTTTTGTTTTGTTCCTGGCAATGAGCTAATAGATGTTTCTGGAATCACATTAAAGC | ||
| AAGCAACTACTGCTCCTTGTGCAGTAATGGATATTACAGGAGTGCAGTCAACTTTGAGAT | ||
| TTCGTGTTCCCTGGATTTCTGACACTCCTTACAGAGTGAACAGGTATACAAAGTCAGCAC | ||
| ATCAGAAAGGTGAGTACACTGCCATTGGGAAGCTTATTGTGTATTGTTATAACAGATTGA | ||
| CCTCTCCTTCTAACGTTGCTTCCCATGTCAGAGTGAATGTTTATCTTTCAGCAATTAACT | ||
| TGGAATGTTTTGCTCCTCTTTATCATGCTATGGATGTTACTACACAAGTTGGAGATGATT | ||
| CTGGAGGTTTTTCAACAACAGTTTCTACAGAACAGAATGTTCCAGATCCCCAAGTTGGTA | ||
| TAACAACCATGAAAGATTTGAAAGGAAAAGCTAACAGAGGGAAAATGGATGTTTCAGGAG | ||
| TACAAGCACCTGTGGGAGCTATCACAACAATTGAGGATCCAGTTTTAGCAAAGAAAGTAC | ||
| CTGAGACATTTCCTGAATTGAAACCTGGAGAATCCAGACATACATCAGATCATATGTCCA | ||
| TCTACAAGTTTATGGGAAGGTCTCATTTCTTGTGCACTTTTACATTCAATTCAAATAATA | ||
| AAGAGTACACATTTCCTATAACCTTGTCTTCAACCTCTAATCCTCCTCATGGTTTGCCAT | ||
| CAACACTGAGGTGGTTTTTCAACTTGTTTCAGTTGTATAGAGGGCCTTTAGATCTGACAA | ||
| TTATTATTACAGGAGCAACTGATGTAGATGGCATGGCCTGGTTCACTCCAGTAGGTCTTG | ||
| CCGTTGATACTCCTTGGGTAGAGAAGGAGTCAGCTTTGTCTATTGACTACAAAACTGCTC | ||
| TTGGAGCTGTCAGATTTAACACAAGGAGAACAGGGAACATTCAGATTAGATTACCATGGT | ||
| ATTCTTATTTATATGCTGTGTCTGGAGCACTGGATGGTTTGGGTGACAAGACAGATTCTA | ||
| CATTTGGATTGGTTTCTATTCAGATTGCAAATTACAATCATTCTGATGAATACTTGTCTT | ||
| TTAGTTGTTATTTGTCTGTCACAGAACAATCAGAGTTTTATTTTCCCAGAGCTCCATTGA | ||
| ACTCAAATGCCATGTTATCCACTGAATCAATGATGAGCAGAATTGCAGCTGGAGACTTGG | ||
| AGTCATCAGTGGATGATCCTAGATCAGAGGAAGATAAAAGATTTGAGAGTCATATAGAAT | ||
| GCAGGAAGCCATATAAAGAACTGAGATTAGAAGTTGGGAAACAAAGACTCAAGTATGCTC | ||
| AGGAAGAATTGTCAAATGAAGTACTTCCACCCCCTAGGAAAATGAAGGGACTGTTTTCAC | ||
| AAGCCAAAATTTCTCTTTTTTATACTGAGGAGCATGAAATAATGAAGTTTTCCTGGAGAG | ||
| GTGTGACTGCTGATACTAGAGCTTTAAGGAGGTTTGGATTCTCTTTGGCCGCAGGCAGAA | ||
| GTGTGTGGACTCTTGAAATGGATGCTGGGGTTCTTACTGGGAGACTGATTAGATTGAATG | ||
| ATGAGAAATGGACAGAAATGAAGGATGACAAGATTGTTTCATTGATTGAAAAGTTTACAA | ||
| GTAACAAATATTGGTCCAAAGTGAATTTCCCACATGGGATGTTGGATCTTGAAGAAATTG | ||
| CTGCCAATTCTAAGGATTTTCCTAACATGTCTGAAACGGATTTGTGTTTCTTGCTGCATT | ||
| GGTTAAATCCAAAGAAAATTAATTTAGCAGATAGAATGCTTGGATTGTCTGGAGTTCAGG | ||
| AAATTAAAGAACAAGGTGTTGGATTAATAGCAGAGTGTAGAACTTTCTTAGATTCTATTG | ||
| CTGGAACTTTAAAATCTATGATGTTTGGATTTCATCATTCTGTGACTGTTGAAATTATAA | ||
| ACACTGTGCTCTGTTTTGTTAAGAGTGGAATTTTGCTTTATGTAATACAACAATTGAATC | ||
| AGGATGAACATTCTCACATAATTGGTTTGTTGAGAGTCATGAATTATGCAGATATTGGTT | ||
| GTTCAGTTATTTCATGTGGCAAAGTTTTTTCCAAAATGCTGGAAACAGTCTTTAATTGGC | ||
| AAATGGACTCCAGAATGATGGAGTTAAGGACTCAGAGTTTTTCCAACTGGTTAAGAGATA | ||
| TTTGTTCTGGGATCACCATTTTTAAAAACTTCAAGGATGCAATTTATTGGCTTTATACAA | ||
| AATTAAAGGACTTTTATGAAGTGAATTATGGCAAGAAGAAGGACATTTTAAATATTCTTA | ||
| AAGATAACCAACAAAAAATAGAGAAAGCCATTGAGGAAGCCGATGAATTTTGCATTTTGC | ||
| AAATCCAAGATGTGGAAAAATTTGAACAGTATCAGAAAGGGGTTGACTTGATACAAAAAT | ||
| TGAGAACTGTTCATTCAATGGCTCAGGTTGATCCAAATTTAATGGTTCATTTGTCACCTT | ||
| TGAGAGATTGTATAGCAAGAGTTCATCAGAAACTTAAAAACCTTGGATCTATAAATCAGG | ||
| CAATGGTAACGAGATGTGAGCCAGTTGTTTGTTATTTATATGGCAAAAGAGGGGGAGGAA | ||
| AGAGCTTAACATCAATTGCATTGGCAACCAAAATTTGTAAACATTATGGTGTTGAGCCTG | ||
| AAAAGAATATCTATACTAAACCTGTGGCTTCAGATTACTGGGATGGATATAGTGGACAAT | ||
| TAGTTTGCATCATTGATGATATTGGCCAAAACACAACAGATGAGGATTGGTCAGATTTTT | ||
| GTCAGTTAGTGTCAGGATGTCCAATGAGATTAAACATGGCCTCTCTTGAGGAGAAGGGTA | ||
| GGCATTTTTCTTCTCCTTTTATAATAGCAACTTCAAATTGGTCAAATCCAAGTCCAAAAA | ||
| CAGTTTATGTTAAGGAAGCAATTGACCGCAGACTCCATTTCAAGGTTGAAGTTAAACCTG | ||
| CTTCATTTTTCAAAAATCCTCACAATGATATGTTGAATGTTAATTTAGCTAAAACAAATG | ||
| ATGCAATCAAAGATATGTCTTGTGTTGATTTGATAATGGATGGACATAATGTTTCATTGA | ||
| TGGATTTGCTCAGTTCTTTAGTCATGACAGTTGAAATTAGAAAACAAAACATGACTGAAT | ||
| TCATGGAGTTGTGGTCTCAGGGAATTTCAGATGATGATAATGATAGTGCAGTAGCTGAGT | ||
| TTTTCCAGTCTTTTCCATCTGGTGAACCATCGAACTCTAAATTATCTGGCTTTTTCCAAT | ||
| CTGTTACTAATCACAAGTGGGTTGCTGTGGGAGCTGCAGTTGGCATTCTTGGAGTGCTCG | ||
| TTGGAGGATGGTTTGTGTATAAGCATTTCTCCCGCAAAGAGGAGGAACCAATCCCAGCTG | ||
| AAGGGGTATATCATGGTGTAACTAAGCCCAAGCAAGTGATTAAATTAGATGCAGATCCAG | ||
| TAGAATCTCAGTCAACTTTGGAAATAGCAGGACTGGTTAGGAAGAACTTGGTTCAGTTTG | ||
| GAGTTGGAGAGAAGAATGGATGTGTGAGATGGGTTATGAATGCCTTGGGAGTGAAAGATG | ||
| ATTGGCTGCTTGTGCCTTCCCATGCTTATAAATTTGAGAAAGATTATGAAATGATGGAGT | ||
| TTTATTTTAATAGAGGTGGAACTTACTATTCAATTTCAGCTGGTAATGTTGTTATTCAAT | ||
| CTTTGGATGTGGGATTCCAGGATGTTGTTCTGATGAAGGTTCCTACAATTCCTAAGTTTA | ||
| GAGATATTACTCAGCATTTTATTAAGAAAGGGGATGTGCCTAGAGCTTTGAATCGCCTGG | ||
| CAACATTAGTGACAACTGTAAATGGAACCCCTATGTTAATTTCTGAGGGCCCACTAAAGA | ||
| TGGAAGAGAAAGCTACTTATGTTCATAAGAAAAATGATGGTACAACAGTTGATTTAACTG | ||
| TGGATCAGGCATGGAGAGGAAAAGGCGAAGGTCTTCCTGGAATGTGTGGTGGGGCCTTGG | ||
| TTTCATCGAATCAATCTATACAGAATGCAATCTTGGGCATCCATGTTGCTGGAGGAAATT | ||
| CAATTCTTGTTGCAAAATTGGTTACTCAAGAAATGTTCCAAAATATTGATAAGAAAATTG | ||
| AAAGTCAGAGAATTATGAAAGTGGAGTTTACTCAGTGTTCAATGAATGTGGTCTCCAAAA | ||
| CGCTTTTTAGAAAGAGTCCCATTTATCATCACATTGATAAAACCATGATTAATTTTCCTG | ||
| CAGCTATGCCCTTTTCTAAAGCTGAAATTGATCCAATGGCTGTGATGTTATCTAAGTATT | ||
| CATTACCTATTGTAGAAGAACCAGAGGATTATAAAGAGGCTTCAATTTTTTATCAAAATA | ||
| AAATAGTGGGTAAGACTCAGTTAGTTGATGATTTTTTAGATCTTGATATGGCCATTACAG | ||
| GGGCCCCAGGAATTGATGCTATCAACATGGATTCATCTCCTGGATTTCCTTATGTCCAGG | ||
| AGAAGTTGACCAAAAGAGATTTAATTTGGTTGGATGAAAATGGTTTATTGCTGGGAGTTC | ||
| ATCCAAGATTGGCTCAGAGAATCTTATTCAATACTGTCATGATGGAAAATTGTTCTGATT | ||
| TGGATGTTGTTTTTACAACCTGTCCAAAAGATGAATTGAGACCATTAGAGAAAGTGTTGG | ||
| AATCAAAAACAAGAGCTATTGATGCTTGTCCTCTGGATTACTCAATTTTGTGCCGAATGT | ||
| ATTGGGGTCCAGCTATTAGTTATTTTCATTTGAATCCAGGTTTCCATACAGGTGTTGCTA | ||
| TTGGCATAGATCCTGATAGACAGTGGGATGAATTATTTAAAACAATGATAAGATTCGGAG | ||
| ATGTTGGTCTTGATTTAGATTTCTCTGCTTTTGATGCTAGTCTTAGTCCATTTATGATTA | ||
| GAGAAGCAGGTAGAATCATGAGTGAACTATCTGGAACTCCATCCCATTTTGGCACAGCTC | ||
| TTATCAATACTATCATTTATTCCAAGCATTTGCTGTATAACTGTTGTTACCATGTCTGTG | ||
| GTTCAATGCCCTCTGGGTCTCCTTGTACAGCTTTGCTAAATTCAATTATTAATAATGTCA | ||
| ATTTGTATTATGTGTTTTCCAAGATATTTGGAAAGTCTCCAGTTTTCTTTTGTCAGGCTT | ||
| TGAAGATTCTCTGTTATGGAGATGATGTTTTAATAGTTTTCTCTCGAGATGTTCAGATTG | ||
| ATAATCTTGATTTGATTGGACAAAAAATTGTAGATGAGTTTAAGAAACTTGGCATGACAG | ||
| CTACTTCTGCTGACAAGAATGTACCTCAGCTGAAACCAGTTTCGGAATTGACTTTTCTCA | ||
| AAAGATCTTTCAATTTGGTAGAGGATAGAATTAGACCTGCAATTTCGGAAAAAACAATTT | ||
| GGTCTTTAATAGCATGGCAGAGAAGTAACGCTGAGTTTGAGCAGAATTTAGAAAATGCTC | ||
| AGTGGTTTGCTTTTATGCATGGCTATGAGTTTTATCAGAAATTTTATTATTTTGTTCAGT | ||
| CCTGTTTGGAGAAAGAGATGATAGAATACAGACTTAAATCTTATGATTGGTGGAGAATGA | ||
| GATTTTATGACCAGTGTTTCATTTGTGACCTTTCATGATTTGTTTAAACAAATTTTCTTA | ||
| AAATTTCTGAGGTTTGTTTATTTCTTTTATCAGTAAAT |
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