Installation fails on FreeBSD #203
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reedacartwright
changed the title
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Thanks for reporting. Could you please try the |
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It didn't work. > gh_install_packages("RSQLite",ref="b-%23203-freebsd")
Suggestion:
- rstats-db/RSQLite R interface for SQLite
Do you want to install the package (Y/n)? y
Installing "RSQLite" package from GitHub, but already installed from CRAN.
Are you sure the package is overwritten (Y/n)? y
Downloading GitHub repo rstats-db/RSQLite@b-%23203-freebsd
from URL https://api.github.com/repos/rstats-db/RSQLite/zipball/b-%23203-freebsd
Installing RSQLite
Downloading GitHub repo rstats-db/DBI@production
from URL https://api.github.com/repos/rstats-db/DBI/zipball/production
Installing DBI
'/usr/local/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore \
--quiet CMD INSTALL \
'/tmp/RtmpeWExnk/devtools12836498bcc4b/rstats-db-DBI-4d9571a' \
--library='/home/reed/R/amd64-portbld-freebsd10.3-library/3.3' \
--install-tests
* installing *source* package 'DBI' ...
** R
** tests
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DBI)
'/usr/local/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore \
--quiet CMD INSTALL \
'/tmp/RtmpeWExnk/devtools1283633ecd82c/rstats-db-RSQLite-b5971d3' \
--library='/home/reed/R/amd64-portbld-freebsd10.3-library/3.3' \
--install-tests
* installing *source* package 'RSQLite' ...
** libs
make: "/tmp/RtmpeWExnk/devtools1283633ecd82c/rstats-db-RSQLite-b5971d3/src/Makevars.local" line 4: Could not find
make: "/tmp/RtmpeWExnk/devtools1283633ecd82c/rstats-db-RSQLite-b5971d3/src/Makevars.local" line 4: Could not find
make: Fatal errors encountered -- cannot continue
make: stopped in /tmp/RtmpeWExnk/devtools1283633ecd82c/rstats-db-RSQLite-b5971d3/src
ERROR: compilation failed for package 'RSQLite'
* removing '/home/reed/R/amd64-portbld-freebsd10.3-library/3.3/RSQLite'
* restoring previous '/home/reed/R/amd64-portbld-freebsd10.3-library/3.3/RSQLite'
Error: Command failed (1)I suspect there is a portability issue with |
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The |
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It failed when I installed from CRAN. And I don't think I can test the patch via cran.
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Nevermind. I figured out that I can just download the source from CRAN and manually apply your patch. Still doesn't work, because BSD make is trying to include a file that doesn't exist, and you rule to create it doesn't help. However, if you change |
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I'll get rid of Makevars.local soon. |
ghost
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krlmlr
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Apr 3, 2017
- `dbWriteTable(append = TRUE)` raises an error if column names are not the same in the data and the existing table (#165). - Removed dummy `dbGetQuery()` method introduced for compatibility with some Bioconductor packages (#187). - The `variance()` and `stdev()` extension functions now return `NULL` for input of length 1 (#201). - Exclude SQLite3 source code from coverage computation again (#204). - `sqlData()` now returns quoted strings, like the default implementation in DBI (#207). - Restore compatibility with older compilers/libraries by using <boost/limits.hpp> (#206). - Remove `Makevars.local` logic, resolve installation issues with non-GNU Make (#203).
krlmlr
added a commit
that referenced
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Jun 19, 2017
API changes ----------- - Updated embedded SQLite to 3.19.3. - 64-bit integers are returned as `integer64` vectors. The `bit64` package is imported to support this data type (#65). - The `row.names` argument to `dbFetch()`, `dbReadTable()`, `dbWriteTable()`, `sqliteBuildTableDefinition()`, and `sqlData()` now defaults to `FALSE`. The old default can be restored temporarily on a per-package basis by calling `pkgconfig::set_config("RSQLite::row.names.query" = NA)`. `NULL` is a valid value for the `row.names` argument, same as `FALSE` (#210). - The `name` argument to `dbBegin()`, `dbCommit()`, and `dbRollback()` is now declared after the ellipsis. Code that calls these methods with an unnamed second argument still works but receives a warning (#208). - The `select.cols` argument to `dbReadTable()` is deprecated, use `dbGetQuery()` with a `SELECT` query instead (#185). - The methods related to tables (`dbReadTable()`, `dbWriteTable()`, `dbExistsTable()`, and `dbRemoveTable()`) always treat the `name` argument as literal name, even if it contains backticks. This breaks the CRAN version (but not the GitHub version) of the sqldf package (#188). - `dbWriteTable(append = TRUE)` raises an error if column names are not the same in the data and the existing table (#165). - `dbFetch()` now errs for `n < -1`, and accepts `n == Inf`. - Removed dummy `dbGetQuery()` method introduced for compatibility with some Bioconductor packages (#187). - `sqlData()` now returns quoted strings, like the default implementation in DBI (#207). - `dbWriteTable()` returns invisibly. - Now returning objects of type `blob` for blobs (#189). - `dbGetRowsAffected()` now returns `NA` for a statement with placeholders, if `dbBind()` has not been called. - If a column contains incompatible values (e.g., numbers and strings), a warning is raised in `dbFetch()` (#161). - Failing to set `PRAGMA cache_size` or `PRAGMA synchronous` in `dbConnect()` now gives a clear warning (#197). - Improve warning message if named parameters are not used in `dbGetPreparedQuery()` or `dbSendPreparedQuery()` (#193). - SQLite collects additional histogram data during `ANALYZE`, which may lead to faster executions of queries (#124). Bug fixes --------- - Identifiers are now escaped with backticks, to avoid ambiguous handling of double quotes in the context of strings (#123). - Fix `dbBind()` behavior and tests. Attempting to bind to a query without parameters throws an error (#114). - Fix corner case when repeatedly fetching from columns that don't have an affinity. - The `variance()` and `stdev()` extension functions now return `NULL` for input of length 1 (#201). - Fix roundtrip of `raw` columns (#116). Documentation ------------- - Remove redundant documentation, link to `DBI` more prominently (#186). Internal -------- - Most DBItest tests now pass. Reduced number of skips shown for tests. - C++ code now compiles with strict compiler settings `-Wall -Wextra -pedantic -Wconversion`. - Restore compatibility with older compilers/libraries by using <boost/limits.hpp> (#206). - Use `boost/cstdint` instead of compound data type for 64-bit values (#198). - Remove `Makevars.local` logic, resolve installation issues with non-GNU Make (#203). - All methods of DBI are reexported. - Registering native functions, as required by R >= 3.4.0. - Use UTF-8 encoded file names as required by the SQLite API, to support non-ASCII file names (#211). - Calling `dbFetch(n = 0)` instead of `dbFetch(n = 1)` in `dbListFields()`. - Exclude SQLite3 source code from coverage computation again (#204).
troels
pushed a commit
to troels/RSQLite
that referenced
this issue
Nov 27, 2019
- Improved tests for numerical precision (r-dbi#203, @harvey131).
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Problem
Installation fails on FreeBSD because
src/Makevarsis not compatible with FreeBSD'smake.Workaround
Force
Rto use GNU Make by starting it with the following command:Error Message
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