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Move from checkout@v1 to checkout@v2 #50

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juliasilge opened this issue Feb 21, 2020 · 1 comment

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bug

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juliasilge commented Feb 21, 2020

Describe the bug
When jobs are re-run, a race condition (? or similar) in checkout@v1 causes jobs to error with the message fatal: reference is not a tree. 🚫 🌳

The Actions team has fixed this problem in actions/checkout@v2 (discussion in actions/checkout#23) so it would be great to move up the checkout version in check-full.yaml and similar.

To Reproduce
Here is a PR that is experiencing this behavior. Every time I click "Re-run jobs", it fails at actions/checkout@v1.

Expected behavior
When jobs are re-run, the checkout succeeds.

The text was updated successfully, but these errors were encountered:

juliasilge added the bug label

jimhester closed this as completed in

5d19b1c

lcolladotor added a commit to lcolladotor/biocthis that referenced this issue


          Prepare biocthis to be shared with the world.

557c2d6

Created both an introductory and a developer's notes vignette, updated README
and docs with examples, added a second biocViews term, fixed some small
bugs/typos.

Related links (as many as I could remember):

* https://rstd.io/tidytools19
* https://twitter.com/CVWickham
* https://twitter.com/hadleywickham
* https://www.rstudio.com/products/rstudio/download
* https://comunidadbioinfo.github.io/post/building-tidy-tools-cdsb-runconf-2019/#.XrbLMxNKiu4
* http://bioconductor.org/
* https://lcolladotor.github.io/pkgs/
* https://stat.ethz.ch/pipermail/bioc-devel/2020-March/016365.html
* https://www.bioconductor.org/help/docker/
* https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016532.html
* https://github.com/features/actions
* https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016650.html
* r-lib/actions#84
* r-lib/usethis#1108
* r-lib/styler#636
* Bioconductor/BiocCheck#57
* Bioconductor/bioconductor.org#54
* http://bioconductor.org/developers/how-to/coding-style/
* https://style.tidyverse.org/
* https://twitter.com/lorenzwalthert
* https://twitter.com/mt_morgan
* https://docs.travis-ci.com/user/languages/r/
* r-lib/pkgdown#1206
* r-lib/pkgdown#1230
* https://twitter.com/jimhester_
* https://www.jimhester.com/talk/2020-rsc-github-actions/
* https://github.com/Bioconductor/BBS
* https://github.com/Bioconductor/packagebuilder
* https://www.appveyor.com/
* r-hub/rhub#52
* r-hub/rhub#38
* https://www.tidyverse.org/blog/2020/04/usethis-1-6-0/
* https://github.com/r-lib/actions/tree/master/examples
* https://yihui.org/en/2018/03/second-pull-request/
* https://github.com/r-lib/actions/blob/master/examples/check-standard.yaml
* https://help.github.com/en/actions
* https://ropenscilabs.github.io/actions_sandbox/
* https://twitter.com/seandavis12
* https://github.com/seandavi/BiocActions/blob/master/.github/workflows/main.yml
* https://twitter.com/CSoneson
* https://github.com/csoneson/dreval/blob/master/.github/workflows/R-CMD-check.yaml
* https://bioc-community.herokuapp.com/
* https://github.com/leekgroup/derfinderPlot/blob/master/.github/workflows/check-bioc.yml
* https://github.com/LieberInstitute/recount3/blob/master/.github/workflows/check-bioc.yml
* https://github.com/hpages
* r-lib/actions#68
* r-lib/actions#85
* https://twitter.com/opencpu
* https://community.rstudio.com/u/const-ae
* https://community.rstudio.com/t/compiler-support-fo-c-14-features-on-windows/57284/4
* r-lib/xml2#296
* r-lib/xml2#302
* https://github.com/r-lib/usethis/blob/master/.github/workflows/R-CMD-check.yaml
* https://github.com/r-lib/usethis/commits/master/.github/workflows/R-CMD-check.yaml
* https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016703.html
* https://stat.ethz.ch/pipermail/bioc-devel/2020-April/thread.html
* r-lib/remotes#296
* r-lib/actions#86
* r-lib/covr#427
* https://github.com/r-lib/actions/blob/master/examples/pr-commands.yaml
* https://www.digitalocean.com/community/tutorials/how-to-install-git-on-ubuntu-18-04
* r-lib/actions#50
* actions/checkout#238
* https://github.com/rocker-org/rocker-versioned2/blob/master/dockerfiles/Dockerfile_rstudio_4.0.0-ubuntu18.04
* https://twitter.com/niteshturaga
* https://twitter.com/cboettig
* rocker-org/rocker-versioned#208
* https://github.community/t5/GitHub-Actions/bd-p/actions
* https://www.r-consortium.org/blog/2020/03/18/cdsb-diversity-and-outreach-hotspot-in-mexico
* https://github.com/maxheld83
* r-lib/actions#87
* https://github.com/yutannihilation

lcolladotor mentioned this issue

Git 2.18 or newer request, motivated from GitHub action workflows rocker-org/rocker-versioned2#52

Closed

xenador1 mentioned this issue

Update main.yml xenador1/hello-github-actions#3

Merged

github-actions bot commented Nov 9, 2022

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