Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
CNVkit_command		CNVkit_command
Mutation_Figure_Patient_ggplot_basic.R		Mutation_Figure_Patient_ggplot_basic.R
Mutation_Figure_Patient_ggplot_cancer_ann_mt2_AA.R		Mutation_Figure_Patient_ggplot_cancer_ann_mt2_AA.R
Mutation_Figure_Patient_ggplot_cancer_ann_with_mt2.R		Mutation_Figure_Patient_ggplot_cancer_ann_with_mt2.R
Mutation_Figure_Patient_ggplot_cancer_annotation.R		Mutation_Figure_Patient_ggplot_cancer_annotation.R
Mutation_Figure_ggplot.R		Mutation_Figure_ggplot.R
Mutation_Figure_ggplot_AA.R		Mutation_Figure_ggplot_AA.R
README.md		README.md
barplot.R		barplot.R
boxplot.R		boxplot.R
cnvkit.sh		cnvkit.sh
combat.R		combat.R
commands		commands
complex_heatmap.R		complex_heatmap.R
count_to_rpkm.R		count_to_rpkm.R
decons.pl		decons.pl
density.R		density.R
dexsq.R		dexsq.R
fisher.R		fisher.R
freq.R		freq.R
gdsc.R		gdsc.R
ggplot_loop.R		ggplot_loop.R
ggplot_loop_new.R		ggplot_loop_new.R
ggplot_notes		ggplot_notes
join_gatk_vcf.R		join_gatk_vcf.R
limma.R		limma.R
make_kat_plot.pl		make_kat_plot.pl
median.R		median.R
minfi_script.R		minfi_script.R
pheno.txt		pheno.txt
plot_kat_chr_wise.pl		plot_kat_chr_wise.pl
rnaseq_normalize.R		rnaseq_normalize.R
run_RSEM.sh		run_RSEM.sh
run_bwa.sh		run_bwa.sh
run_dream.sh		run_dream.sh
run_elastic_mod.pl		run_elastic_mod.pl
run_macs.sh		run_macs.sh
somaticSignatures.r		somaticSignatures.r
tcga_download.sh		tcga_download.sh
ttest_loop.R		ttest_loop.R
venn.R		venn.R
weka.pl		weka.pl

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myCodes

These are useful test codes.