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Samples merging seems to write in the original directories #16

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nukappa opened this issue Sep 6, 2021 · 2 comments
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Samples merging seems to write in the original directories #16

nukappa opened this issue Sep 6, 2021 · 2 comments

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@nukappa
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nukappa commented Sep 6, 2021

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@sztankatt
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This is ok, as merging happens after the unaligned_bc_tagged.bam step. Unaligned .bam files from different samples are merged, and then everything is processed the same downstream. Since these files were flagged temporary() before, they need to be recreated, thats why there might be some writing happening to the original directories

@nukappa
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nukappa commented Sep 7, 2021

But why not start after the final.bam files? avoids all unnecessary processing and proceeds with quantification of the DGE.

@nukappa nukappa mentioned this issue Sep 7, 2021
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sztankatt added a commit that referenced this issue Sep 7, 2021
@sztankatt
run_mode deduced from parents during merging. solves #15 and #16
8885749
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@sztankatt @nukappa