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@karasikov karasikov released this 30 Aug 16:14
· 47 commits to master since this release
v0.3.6
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Learn about vigilant mode.

This update contains mostly reliability improvements.

Important: Besides that, it implements a new compression for the index of suffix ranges. The de Bruijn graphs constructed with older versions of MetaGraph have to be reindexed with metagraph transform -o graph_updated graph.dbg -v -p <NUM_THREADS>

What's Changed

  • detect max number of open files and limit num chunks merged by @karasikov in #411
  • Server now reports the max score for a query sequence by @hmusta in #414
  • Use 1 file per EliasFano stream for faster construction with fewer open files by @karasikov in #415
  • retry on failed write in sdsl::int_vector_buffer by @karasikov in #422
  • Retry on failed read by @karasikov in #429
  • Discard edges to dummy nodes in GFA assembly by @hmusta in #428
  • Workaround for bug in g++-8.2 by @hmusta in #425
  • Compress node ranges index (=> index longer suffixes with less memory overhead) by @karasikov in #417
  • Various improvements and fixes in annotations by @karasikov in #423

Full Changelog: v0.3.5...v0.3.6

Contributors

hmusta and karasikov
Assets 8
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