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1. parashardhapola/scarf parashardhapola/scarf Public

   Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

   Python 90 12

2. DB_AKC_citeseq DB_AKC_citeseq Public

   Accompanying code for analysis of manuscript in Nature Aging: Implications of stress-induced gene expression for hematopoietic stem cell aging studies

   HTML

3. CB_FL CB_FL Public

   Accompanying code for: Single-cell multiomics of human fetal hematopoiesis defines a developmental specific population and a fetal signature

   R

4. DB_QZ_multiome DB_QZ_multiome Public

   Multiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2

   Python

5. CB_lab_cookiecutter CB_lab_cookiecutter Public

   Template to generate analysis project structure for bioinformaticians in the Charlotta Böijers lab at Lund University.

   Python

6. dotfiles dotfiles Public

   my dotfiles

   Vim Script