Accompanying code for Ex vivo Expansion Potential of Murine Hematopoietic Stem Cells: A Rare Property Only Partially Predicted by Phenotype, published in eLife. https://doi.org/10.7554/eLife.91826.2
Multiome data generated by Qinyu Zhang in David Bryder's lab.
The code used in the manuscript resides in the notebooks directory.
├── LICENSE
├── multiome.smk
├── multiome-config.yaml
├── README.md <- The top-level README for developers using this project.
├── data
│ ├── external <- Data from third party sources.
│ ├── interim <- Intermediate data that has been transformed.
│ ├── processed <- The final, canonical data sets for modeling.
│ └── raw <- The original, immutable data dump.
│
├── docs <- A default Sphinx project; see sphinx-doc.org for details
│
├── notebooks <- Jupyter notebooks.
│
├── references <- Data dictionaries, manuals, and all other explanatory materials.
│
├── reports <- Generated analysis as HTML, PDF, LaTeX, etc.
│ └── figures <- Generated graphics and figures to be used in reporting
│ └── snakemake <- Snakemake report output (html report, graphs etc)
│
├── envs <- YAML files specifying the conda environments used in the project.
│
└── src <- Source code for use in this project.
└── snakemake
Project based on the cookiecutter data science project template. #cookiecutterdatascience