Add test dataholder class

mmtf-common/src/main/java/org/rcsb/mmtf/dataholders/BioAssemblyTrans.java

@@ -11,18 +11,14 @@
  *
  * @author Anthony Bradley
  */
-public class BioAssemblyTrans implements Serializable {
-
-
-  /** Serial id for this version of the format. */
-  private static final long serialVersionUID = -8109941242652091495L;
+public class BioAssemblyTrans {
 
 
   /** The indices of the chains this bioassembly references. */
   private int[] chainIndexList;
 
   /** The 4x4 matrix transformation specifying a rotation and a translation. */
-  private double[] transformation;
+  private double[] matrix;
 
 
   /**
@@ -32,8 +28,8 @@ public class BioAssemblyTrans implements Serializable {
    *
    * @return the transformation
    */
-  public final double[] getMatrix() {
-    return transformation;
+  public double[] getMatrix() {
+    return matrix;
   }
 
   /**
@@ -43,16 +39,16 @@ public final double[] getMatrix() {
    * 
    * @param inputTransformation the new transformation
    */
-  public final void setMatrix(final double[] transformation) {
-    this.transformation = transformation;
+  public void setMatrix(double[] transformation) {
+    this.matrix = transformation;
   }
 
   /**
    * Gets the indices of the chains this bioassembly refers to.
    *
    * @return a list of integers indicating the indices (zero indexed) of the chains this bioassembly refers to.
    */
-  public final int[] getChainIndexList() {
+  public int[] getChainIndexList() {
     return chainIndexList;
   }
 
@@ -61,7 +57,7 @@ public final int[] getChainIndexList() {
    *
    * @param  a list of integers indicating the indices (zero indexed) of the chains this bioassembly refers to.
    */
-  public final void setChainIndexList(final int[] inputChainId) {
+  public void setChainIndexList(int[] inputChainId) {
     this.chainIndexList = inputChainId;
   }
 

mmtf-common/src/test/java/org/rcsb/mmtf/dataholders/TestDataHolders.java

@@ -0,0 +1,27 @@
+package org.rcsb.mmtf.dataholders;
+
+
+import org.junit.Test;
+import org.unitils.reflectionassert.ReflectionAssert;
+
+import uk.co.jemos.podam.api.PodamFactory;
+import uk.co.jemos.podam.api.PodamFactoryImpl;
+
+public class TestDataHolders {
+
+	@Test
+	public void testBeans(){
+		PodamFactory factory = new PodamFactoryImpl();
+		// Tests if setters are set appropriately
+		ReflectionAssert.assertPropertiesNotNull("Some properties null.", 
+				factory.manufacturePojo(MmtfBean.class));
+		ReflectionAssert.assertPropertiesNotNull("Some properties null.", 
+				factory.manufacturePojo(BioAssemblyData.class));
+		ReflectionAssert.assertPropertiesNotNull("Some properties null.", 
+				factory.manufacturePojo(BioAssemblyTrans.class));
+		ReflectionAssert.assertPropertiesNotNull("Some properties null.", 
+				factory.manufacturePojo(Entity.class));
+		ReflectionAssert.assertPropertiesNotNull("Some properties null.", 
+				factory.manufacturePojo(PDBGroup.class));
+	}
+}