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Merge pull request #30 from altaite/speedup
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Speedup
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josemduarte committed Mar 28, 2017
2 parents 8aa07a8 + 72e468e commit 2978574
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Showing 22 changed files with 3,844 additions and 3,121 deletions.
108 changes: 54 additions & 54 deletions mmtf-api/pom.xml
Original file line number Diff line number Diff line change
@@ -1,54 +1,54 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.rcsb</groupId>
<artifactId>mmtf</artifactId>
<version>1.0.4-SNAPSHOT</version>
</parent>
<artifactId>mmtf-api</artifactId>
<packaging>jar</packaging>
<name>mmtf-api</name>
<url>http://maven.apache.org</url>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
</dependency>
</dependencies>
<build>
<plugins>

<!-- Excluding demo package is required for avoiding namespace clashes
(demo package is in all modules) for signing the jar. See issue #387 -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
</plugin>

<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<debug>true</debug>
</configuration>
</plugin>
</plugins>
</build>

<reporting>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.3</version>
</plugin>
</plugins>
</reporting>


</project>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.rcsb</groupId>
<artifactId>mmtf</artifactId>
<version>1.0.4-SNAPSHOT</version>
</parent>
<artifactId>mmtf-api</artifactId>
<packaging>jar</packaging>
<name>mmtf-api</name>
<url>http://maven.apache.org</url>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
</dependency>
</dependencies>
<build>
<plugins>

<!-- Excluding demo package is required for avoiding namespace clashes
(demo package is in all modules) for signing the jar. See issue #387 -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
</plugin>

<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<debug>true</debug>
</configuration>
</plugin>
</plugins>
</build>

<reporting>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.3</version>
</plugin>
</plugins>
</reporting>


</project>
234 changes: 117 additions & 117 deletions mmtf-codec/pom.xml
Original file line number Diff line number Diff line change
@@ -1,117 +1,117 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.rcsb</groupId>
<artifactId>mmtf</artifactId>
<version>1.0.4-SNAPSHOT</version>
</parent>
<artifactId>mmtf-codec</artifactId>
<packaging>jar</packaging>

<name>mmtf-codec</name>
<url>http://maven.apache.org</url>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<dependencies>
<dependency>
<groupId>org.rcsb</groupId>
<artifactId>mmtf-api</artifactId>
<version>1.0.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.rcsb</groupId>
<artifactId>mmtf-serialization</artifactId>
<version>1.0.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.4</version>
</dependency>
<!-- TEST DEPENEDENCIES -->
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
</dependency>
<dependency>
<groupId>uk.co.jemos.podam</groupId>
<artifactId>podam</artifactId>
</dependency>
<dependency>
<groupId>org.unitils</groupId>
<artifactId>unitils-core</artifactId>
</dependency>
<!-- junit managed by parent pom, don't set version or scope here -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
</dependency>

<!-- logging dependencies (managed by parent pom, don't set versions or
scopes here) -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<!-- binding for log4j2, scope=runTime set in parent pom -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-slf4j-impl</artifactId>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
</dependency>

</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
</configuration>
</plugin>

<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>

<configuration>
<debug>true</debug>
</configuration>
</plugin>
</plugins>
</build>

<reporting>
<plugins>
<plugin>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.1</version>
<configuration>
<aggregate>true</aggregate>
<breakiterator>true</breakiterator>
<quiet>true</quiet>
<source>1.8</source>
<verbose>false</verbose>
<linksource>true</linksource>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.3</version>
</plugin>
</plugins>
</reporting>


</project>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.rcsb</groupId>
<artifactId>mmtf</artifactId>
<version>1.0.4-SNAPSHOT</version>
</parent>
<artifactId>mmtf-codec</artifactId>
<packaging>jar</packaging>

<name>mmtf-codec</name>
<url>http://maven.apache.org</url>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<dependencies>
<dependency>
<groupId>org.rcsb</groupId>
<artifactId>mmtf-api</artifactId>
<version>1.0.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.rcsb</groupId>
<artifactId>mmtf-serialization</artifactId>
<version>1.0.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.4</version>
</dependency>
<!-- TEST DEPENEDENCIES -->
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
</dependency>
<dependency>
<groupId>uk.co.jemos.podam</groupId>
<artifactId>podam</artifactId>
</dependency>
<dependency>
<groupId>org.unitils</groupId>
<artifactId>unitils-core</artifactId>
</dependency>
<!-- junit managed by parent pom, don't set version or scope here -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
</dependency>

<!-- logging dependencies (managed by parent pom, don't set versions or
scopes here) -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<!-- binding for log4j2, scope=runTime set in parent pom -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-slf4j-impl</artifactId>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
</dependency>

</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
</configuration>
</plugin>

<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>

<configuration>
<debug>true</debug>
</configuration>
</plugin>
</plugins>
</build>

<reporting>
<plugins>
<plugin>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.1</version>
<configuration>
<aggregate>true</aggregate>
<breakiterator>true</breakiterator>
<quiet>true</quiet>
<source>1.8</source>
<verbose>false</verbose>
<linksource>true</linksource>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.3</version>
</plugin>
</plugins>
</reporting>


</project>
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