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Added check for solvent DOD.
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pwrose committed Jun 13, 2017
1 parent b2777aa commit d55ac03
Showing 1 changed file with 2 additions and 1 deletion.
Original file line number Diff line number Diff line change
Expand Up @@ -237,7 +237,8 @@ private static Set<Integer> getIndicesToAdd(StructureDataInterface structure, in
atomIndices.add(i);
}
}
} else if (! structure.getGroupName(groupIndex).equals("HOH")){
} else if (! structure.getGroupName(groupIndex).equals("HOH")
|| structure.getGroupName(groupIndex).equals("DOD")) {
// Keep all non-polymer atoms, except for water.
// Water should be of type "water", however, a few structures (1ZY8, 2G10, 2Q44, 2Q40)
// contain waters as non-polymers. These structures have in common that water has
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