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NPE with RC3 #92

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sbliven opened this issue Nov 22, 2017 · 1 comment
Closed

NPE with RC3 #92

sbliven opened this issue Nov 22, 2017 · 1 comment
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sbliven commented Nov 22, 2017 

$ cesymm-2.0.0-RC3/runCESymm.sh --symmlevels 3 --order 8 d1flgb1
Structure	NumRepeats	SymmGroup	Reason
18542 [pool-2-thread-1] ERROR workers.CeSymmWorker - Could not complete job: d1flgb1
java.lang.NullPointerException
	at org.biojava.nbio.structure.symmetry.internal.CeSymmResult.isSignificant(CeSymmResult.java:84) ~[cesymm-2.0.0-RC3.jar:2.0.0-SNAPSHOT]
	at org.biojava.nbio.structure.symmetry.internal.CeSymmIterative.iterate(CeSymmIterative.java:147) ~[cesymm-2.0.0-RC3.jar:2.0.0-SNAPSHOT]
	at org.biojava.nbio.structure.symmetry.internal.CeSymmIterative.execute(CeSymmIterative.java:110) ~[cesymm-2.0.0-RC3.jar:2.0.0-SNAPSHOT]
	at org.biojava.nbio.structure.symmetry.internal.CeSymm.analyze(CeSymm.java:387) ~[cesymm-2.0.0-RC3.jar:2.0.0-SNAPSHOT]
	at workers.CeSymmWorker.run(CeSymmWorker.java:68) [cesymm-2.0.0-RC3.jar:2.0.0-SNAPSHOT]
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [?:1.8.0_131]
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [?:1.8.0_131]
	at java.lang.Thread.run(Thread.java:748) [?:1.8.0_131]
@sbliven sbliven self-assigned this Nov 22, 2017
sbliven added a commit to sbliven/biojava-sbliven that referenced this issue Jan 13, 2018
@sbliven
Fix rcsb/symmetry#92: NullPointerException
0b24ceb
@sbliven sbliven mentioned this issue Jan 13, 2018
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sbliven added a commit to biojava/biojava that referenced this issue Jan 15, 2018
@sbliven
Merge pull request #723 from sbliven/fix92
b62c2e1 
Fix rcsb/symmetry#92: NullPointerException
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sbliven commented Jan 15, 2018

Will be fixed in Biojava 4.2.12

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