[Core] Move update node with php doc info changed into PhpDocInfo::markAsChanged()

[samsonasik]

The DocBlockUpdater::updateRefactoredNodeWithPhpDocInfo() was introduced at PR:

• [Down_To_PHP71] Handle Downgrade Param Widening + Downgrade Reflection Get on DowngradeLevelSetList::DOWN_TO_PHP_71 #3001

for ensure refresh refactored node with PhpDocInfo before refresh Scope, which was unable to use existing DocBlockUpdater::updateNodeWithPhpDocInfo().

After various try, it seems it can be moved to PhpDocInfo::markAsChanged() so it only apply when PhpDocInfo::markAsChanged() called.

[samsonasik]

It seems cause error on AttributeCompatibleAnnotationRectorTest, closing for now.