v0.3.3

Improved the regex responsible for infering the fwd and rev seq files.
Fixes bug in unifrac dist output method arguments

v0.3.2

fixes dependency and compatibility bugs

v0.3.1

fixes requirements.txt ordering bugs.
numpy should be installed separately from the rest of the requirements. Also, scipy should be installed before the scikit-xxx packages.

v0.3.0

The code has largely been re-written using class abstraction.

Utility classes have been added that wrap around the mothur and blast functions.

Multithreading stability has been greatly improved - users should not have to worry about how many processors they are running their work over even when running the SQLite style databases.

Much of the data analysis has been moved away from database-centric work into RAM. As such analyses are more than a order of magnitude faster.

Two testing frameworks have been implemented. One very basic one for the user to test basic functionality and one django-based fire testing class for more thorough testing.

v0.2.7

Bug fix for mothur pcr regex

v0.2.6

Fix mothur make file bug where R1 must be before R2 else name mismatch error given and make.contig fails.

v0.2.5

Fixing of some bugs in the new seq output code
Increased the lockout threshold to improve concurrency

v0.2.4

Fixed a bug concerned with looking for whether Mothur had produced a scrapped PCR file or not.

v0.2.3

New methods allowing the outputs to be made according to a set of DataSetSample UIDs rather than DataSet UIDs.

symportal manuscript release

This release will coincide with the publication of the associated manuscript.