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[#47242447] Add two sample workflows.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,176 @@ | ||
| { | ||
| "a_galaxy_workflow": "true", | ||
| "annotation": "{\"refinery_type\": \"analysis\"}", | ||
| "format-version": "0.1", | ||
| "name": "Test workflow: 5 steps without branching", | ||
| "steps": { | ||
| "0": { | ||
| "annotation": "", | ||
| "id": 0, | ||
| "input_connections": {}, | ||
| "inputs": [ | ||
| { | ||
| "description": "", | ||
| "name": "Input Dataset" | ||
| } | ||
| ], | ||
| "name": "Input dataset", | ||
| "outputs": [], | ||
| "position": { | ||
| "left": 200, | ||
| "top": 270 | ||
| }, | ||
| "tool_errors": null, | ||
| "tool_id": null, | ||
| "tool_state": "{\"name\": \"Input Dataset\"}", | ||
| "tool_version": null, | ||
| "type": "data_input", | ||
| "user_outputs": [] | ||
| }, | ||
| "1": { | ||
| "annotation": "", | ||
| "id": 1, | ||
| "input_connections": { | ||
| "input_file": { | ||
| "id": 0, | ||
| "output_name": "output" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "name": "Refinery test tool 1-1", | ||
| "outputs": [ | ||
| { | ||
| "name": "output_file", | ||
| "type": "txt" | ||
| } | ||
| ], | ||
| "position": { | ||
| "left": 404, | ||
| "top": 248 | ||
| }, | ||
| "post_job_actions": {}, | ||
| "tool_errors": null, | ||
| "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | ||
| "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | ||
| "tool_version": "0.1", | ||
| "type": "tool", | ||
| "user_outputs": [] | ||
| }, | ||
| "2": { | ||
| "annotation": "", | ||
| "id": 2, | ||
| "input_connections": { | ||
| "input_file": { | ||
| "id": 1, | ||
| "output_name": "output_file" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "name": "Refinery test tool 1-1", | ||
| "outputs": [ | ||
| { | ||
| "name": "output_file", | ||
| "type": "txt" | ||
| } | ||
| ], | ||
| "position": { | ||
| "left": 623, | ||
| "top": 251 | ||
| }, | ||
| "post_job_actions": {}, | ||
| "tool_errors": null, | ||
| "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | ||
| "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | ||
| "tool_version": "0.1", | ||
| "type": "tool", | ||
| "user_outputs": [] | ||
| }, | ||
| "3": { | ||
| "annotation": "", | ||
| "id": 3, | ||
| "input_connections": { | ||
| "input_file": { | ||
| "id": 2, | ||
| "output_name": "output_file" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "name": "Refinery test tool 1-1", | ||
| "outputs": [ | ||
| { | ||
| "name": "output_file", | ||
| "type": "txt" | ||
| } | ||
| ], | ||
| "position": { | ||
| "left": 841, | ||
| "top": 252 | ||
| }, | ||
| "post_job_actions": {}, | ||
| "tool_errors": null, | ||
| "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | ||
| "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | ||
| "tool_version": "0.1", | ||
| "type": "tool", | ||
| "user_outputs": [] | ||
| }, | ||
| "4": { | ||
| "annotation": "", | ||
| "id": 4, | ||
| "input_connections": { | ||
| "input_file": { | ||
| "id": 3, | ||
| "output_name": "output_file" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "name": "Refinery test tool 1-1", | ||
| "outputs": [ | ||
| { | ||
| "name": "output_file", | ||
| "type": "txt" | ||
| } | ||
| ], | ||
| "position": { | ||
| "left": 1053, | ||
| "top": 254 | ||
| }, | ||
| "post_job_actions": {}, | ||
| "tool_errors": null, | ||
| "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | ||
| "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | ||
| "tool_version": "0.1", | ||
| "type": "tool", | ||
| "user_outputs": [] | ||
| }, | ||
| "5": { | ||
| "annotation": "{\"output_file\": {\"name\":\"test tool out\", \"description\":\"\", \"type\":\"txt\"}}", | ||
| "id": 5, | ||
| "input_connections": { | ||
| "input_file": { | ||
| "id": 4, | ||
| "output_name": "output_file" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "name": "Refinery test tool 1-1", | ||
| "outputs": [ | ||
| { | ||
| "name": "output_file", | ||
| "type": "txt" | ||
| } | ||
| ], | ||
| "position": { | ||
| "left": 1271, | ||
| "top": 257 | ||
| }, | ||
| "post_job_actions": {}, | ||
| "tool_errors": null, | ||
| "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | ||
| "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | ||
| "tool_version": "0.1", | ||
| "type": "tool", | ||
| "user_outputs": [] | ||
| } | ||
| } | ||
| } |
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