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*[8]* Upload test workflows and dummy tools into the test toolshed #208

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hackdna opened this issue Feb 13, 2014 · 11 comments
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*[8]* Upload test workflows and dummy tools into the test toolshed #208

hackdna opened this issue Feb 13, 2014 · 11 comments
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@hackdna
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hackdna commented Feb 13, 2014

create dummy tools to simulate different types of workflows (different number of inputs/outputs, failure modes, etc)

test tool should create empty files

Pivotal Tracker story 47242447 (Ilya Sytchev - Apr 1, 2013)

@ngehlenborg
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Test "software" (to be wrapped into one or more Galaxy tool wrappers) that I would like to have:

  • multiple inputs and outputs (multiple wrappers could be created to allow for different combinations of inputs and outputs and different combinations of input and output types)
  • multiple outputs (wrapper with one output, wrapper with two outputs, wrapper with three outputs)
  • parameter to set probability that the tool will fail (0 = fail never, 1 = fail always, anything in between = fail with probability p)
  • parameter to set type of fail event (return non-zero, write to stderr)
  • parameter to set wait time in seconds
  • tool should simply concatenate its inputs (prefixed with the number/name of the input that was used to feed them in), write them to a file for each output and in each output file prefix the content with the name/number of that output (the chain of prefixes will thus tell the path that the data took through the workflow) (Nils Gehlenborg - Apr 3, 2013)

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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@3286fee

[#47242447] Initial commit: test tool and Galaxy wrapper. (Ilya Sytchev - May 8, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@01755ce

[#47242447] Move test tools to a separate subfolder. (Ilya Sytchev - May 8, 2013)

@ghost ghost assigned hackdna Feb 13, 2014
@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@d9c421b

[#47242447] Add test tool with one input and two outputs. (Ilya Sytchev - May 8, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@196fe41

[#47242447] Add workflow test tools: two inputs and one/two outputs. Code cleanup. (Ilya Sytchev - May 10, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@d139096

[#47242447] Add test tool with two inputs and six outputs (to mimic SPP tool). (Ilya Sytchev - May 13, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@a129c2d

[#47242447] Fix error in the description of the 2-2 test tool. (Ilya Sytchev - May 13, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@ebe411e

[#47242447] Minor changes. (Ilya Sytchev - May 13, 2013)

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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@21df31e

[#47242447] Add two sample workflows. (Ilya Sytchev - May 13, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@e84522c

[#47242447] Add an option to produce empty output files. (Ilya Sytchev - May 13, 2013)

@hackdna
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hackdna commented Feb 13, 2014

Commit by Ilya Sytchev
refinery-platform/galaxy-tools@5dd83e0

[#47242447] Update sample workflows to provide empty output file option. (Ilya Sytchev - May 13, 2013)

@hackdna hackdna closed this as completed Feb 13, 2014
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