hcpxnat

Python-XNAT interface for HCP

Clone hcpxnat into the root of your project and instantiate like so:

from hcpxnat.interface import HcpInterface
intradb = HcpInterface(url='https://intradb.humanconnectome.org',
                       username='admin', password='pass',
                       project='HCP_Phase2')
# Or with a config file
intradb = HcpInterface(config='/home/user/.hcpxnat.cfg')

Config File Example:

[auth]
username=admin
password=pass

[site]
hostname=https://hcpx-demo.humanconnectome.org
project=HCP_Q3

Usage Examples:

>>> sessions = intradb.getSessions()
>>> sessions[0].get('ID')
u'HCP_E00001'

>>> intradb.subject_label = '100'
>>> intradb.session_label = '100_strc'
>>> intradb.getSessionId()
u'HCP_E01010'

>>> intradb.getSessionScans()
--> Returns list of all scans as dict

>>> intradb.scan_id = '10'
>>> resources = intradb.getScanResources()
>>> resources[0]['label']
u'DICOM'

>>> intradb.getSubjects(project='HCP')
[{u'ID': u'HCP_S123', u'URI': u'/data/HCP_S123', u'insert_date': u'2014-06-19 23:02:01.383',  
  u'insert_user': u'admin', u'label': u'3214', u'project': u'HCP'}, ...]

>>> intradb.getUsers()
[{u'email': u'bob@u.edu', u'firstname': u'Bob', u'lastname': u'Sagot', u'login': u'bsag',  
  u'xdat_user_id': u'56'}, ...]

>>> intradb.setExperimentElement('xsiType', 'BMI', 120)