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reyesaldasoro committed Sep 9, 2019
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Expand Up @@ -30,35 +30,32 @@ quantitative measurements related to their images.</p>

<p>With time, it become evident that it was better to disseminate the algorithms as Matlab Scripts to be run locally instead of cloud-based. The algorithms available at CAIMAN can now be accessed in GitHub: </p>

* <b>shading correction </b>based on a signal envelope estimation retrospective algorithm,
* <b>shading correction </b>based on a signal envelope estimation retrospective algorithm,

https://github.com/reyesaldasoro/shading-correction

<img style="width: 449px; height: 208px;" alt="Shading Correction" src="shading.jpg"></td>
<img style="width: 449px; height: 208px;" alt="Shading Correction" src="Figures/shading.jpg"></td>

* <b>measuring cellular migration</b> for scratch wound assays

https://github.com/reyesaldasoro/Cell-Migration

<img style="width: 180px; height: 464px;" alt="Migration measurement" src="migration.jpg" rotate="90"><br>
<img style="width: 180px; height: 464px;" alt="Migration measurement" src="Figures/migration.jpg" rotate="90"><br>

* <b>Microvessel Segmentation</b> from tissue stained with immunohistochemistry (CD-31, blue-brown)

https://github.com/reyesaldasoro/Microvessel-Segmentation

<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figure6CD31.jpg"></td>
<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figures/Figure6CD31.jpg"></td>

* <b>Tracing of vessels</b> for in-vivo intravital microscopy

https://github.com/reyesaldasoro/Scale-Space-Vessel-Tracing

<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="tracing2.png"></td>
<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figures/tracing2.png"></td>

* <b>Chromatic Analysis</b> originally for immunohistochemistry and intravital microscopy, but can be used for anything

https://github.com/reyesaldasoro/Chromatic-Analysis

<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="chromaticity.jpg"></td>



<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figures/chromaticity.jpg"></td>

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