Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

'check_experiments' does not detect duplicate error filenames #402

Closed
richelbilderbeek opened this issue Feb 25, 2020 · 2 comments
Closed
Assignees
Labels
high priority Do this first
Projects

Comments

@richelbilderbeek
Copy link
Owner

Describe the bug

If there are multiple experiments, one generative, and one candidate, these should save their errors to different files.

To Reproduce

  experiments <- create_test_pir_params_setup(
    has_candidate = TRUE
  )$experiments
  experiments[[1]]$errors_filename <- "errors.csv"
  experiments[[2]]$errors_filename <- "errors.csv"

  expect_equal(experiments[[1]]$inference_conditions$model_type, "generative")
  expect_equal(experiments[[2]]$inference_conditions$model_type, "candidate")

  # Should give error ...
  expect_error(check_experiments(experiments))

  # ... because these files should differ
  expect_true(experiments[[1]]$errors_filename != experiments[[2]]$errors_filename)

Expected behavior

See tests

Environment:
Show the results of running the following script:

library(mcbette)
mcbette::mcbette_report()
***********
* mcbette *
***********
Can run mcbette: TRUE
OS: unix
****************
* Dependencies *
****************
beautier version: 2.3.5
tracerer version: 2.0.4
beastier version: 2.1.3
mauricer version: 2.0.6
babette version: 2.1.2
**********
* BEAST2 *
**********
Java version: 11.0.6+10-post-Ubuntu-1ubuntu119.10.1
Is BEAST2 installed: TRUE
BEAST2 version: 2.6.1
BEAST2 default path: /home/richel/.local/share/beast/bin/beast
*******************
* BEAST2 packages *
*******************
Is BEAST2 NS package installed: TRUE
BEAST2 NS installed version: 1.1.0
BEAST2 NS latest version: 1.1.0
***************
* sessionInfo *
***************
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 19.10

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0

locale:
 [1] LC_CTYPE=en_US.UTF-8          LC_NUMERIC=C                 
 [3] LC_TIME=en_US.UTF-8           LC_COLLATE=en_US.UTF-8       
 [5] LC_MONETARY=en_US.UTF-8       LC_MESSAGES=en_US.UTF-8      
 [7] LC_PAPER=nl_NL.UTF-8          LC_NAME=nl_NL.UTF-8          
 [9] LC_ADDRESS=nl_NL.UTF-8        LC_TELEPHONE=nl_NL.UTF-8     
[11] LC_MEASUREMENT=en_US.UTF-8    LC_IDENTIFICATION=nl_NL.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] compiler_3.6.1 magrittr_1.5   tools_3.6.1    curl_4.3       rappdirs_0.3.1
 [6] beautier_2.3.5 mcbette_1.8.2  mauricer_2.0.6 stringi_1.4.6  beastier_2.1.3
[11] stringr_1.4.0  testit_0.11    rJava_0.9-11  

Additional context

None.

@richelbilderbeek richelbilderbeek self-assigned this Feb 25, 2020
@richelbilderbeek richelbilderbeek added this to To do in v1.2 via automation Feb 25, 2020
@richelbilderbeek
Copy link
Owner Author

Marked as such:

test_that("different error filenames between generative and candidate", {

  if (rappdirs::app_dir()$os == "win") return()

  experiments <- create_test_pir_params_setup(
    has_candidate = TRUE
  )$experiments
  experiments[[1]]$errors_filename <- "errors.csv"
  experiments[[2]]$errors_filename <- "errors.csv"

  skip("Issue 402. Issue #402")
  expect_error(check_experiments(experiments))

  expect_equal(experiments[[1]]$inference_conditions$model_type, "generative")
  expect_equal(experiments[[2]]$inference_conditions$model_type, "candidate")

  expect_true(experiments[[1]]$errors_filename != experiments[[2]]$errors_filename)
})

@richelbilderbeek richelbilderbeek moved this from To do to In progress in v1.2 Feb 25, 2020
@richelbilderbeek richelbilderbeek added the high priority Do this first label Feb 25, 2020
richelbilderbeek pushed a commit that referenced this issue Feb 25, 2020
@richelbilderbeek
Copy link
Owner Author

It does now. It even detects bugs where I hoped would be none.

v1.2 automation moved this from In progress to Done Feb 26, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
high priority Do this first
Projects
v1.2
  
Done
Development

No branches or pull requests

1 participant