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tmp file output folder #6

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hoelzer opened this issue Jan 12, 2023 · 0 comments

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hoelzer commented Jan 12, 2023

On a HPC (e.g. Slurm) we might run into an issue with too many and too large tmp files written to /var/tmp

I think that's because of
https://gitlab.com/RKIBioinformaticsPipelines/president/-/blob/master/president/statistics.py#L326

Suggestion: we could add a parameter to point tmp files to somewhere else.

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