Trend_Analysis

All of the files used to produce "Effects of Natural Variability of Seawater Temperature, Time Series Length, Decadal Trend, and Instrument Precision on the Ability to Detect Temperature Trends"

File description

• The text of the paper may be found in "/LaTeX/Trend_Analysis.tex"
• The code used to create the meta-data and statistics referenced in the text may be found under their corresponding section and subsection headers in the file "5.Text.R"
• The code used to prepare the monthly data for their modelling may be found in "1.Data_assembly.R"
• The code used to fit the models may be found in "2.Model_fitting.R"
• The code used to create the figures seen in the paper may be found in "3.Figures.R"
• The code used to create the tables seen in the paper may be found in "4.Tables.R"
• The code used to perform the analyses for the stats referenced in the paper may be found in "5.Text.R" under the corresponding sub-headers
• The "/data" folder contains the raw data used in the analyses as well as their output
• The "/func" folder contains custom made functions used in the analyses
• The "/graph" folder contains the files necessary to create maps, as well as the output of "3.Figures.R"
• The "/setupParams" folder contains the site list of the SACTN and a custom ggplot2 theme
• The "/LaTeX" folder contains the files used to compile "/LaTeX/Trend_Analysis.tex", the body of the text

2016/07/05

• Added the basic files required to run all analyses and write up the results for publication

2016/07/06

• Effects of linear interpolation of missing monthly values analysed
• The relevant code in "trend_analysis.R" changed so that NA values are no longer interpolated or dropped

2016/07/07

• GLS model re-run without linear interpolation
• Removed the file "func/detrendFunc.R" as this analysis is now performed directly in "trend_analysis.R"
• Results and Discussion sections in "Trend_analysis.R" outlined with relevant information for completion
• Added the file "tables.R"
• The code for several more figures added to "figures.R"

2016/07/08

• Beginning of results section edited

2016/07/09

• Created "/LaTeX" folder
• Completed several more meta-analyses for results
• Results section nearly finished
• Compiled document for first time
• All figures used in "/LatEX/Trend_analysis.R" added to "/LaTeX" folder

2016/07/10

• Populated minor correction to model results to all figures
• Minor updates to abstract, intro and methods
• Added results of analysis of length vs precision to the results section
• Discussion section is now a complete rough draft

2016/07/11

• Discussion section smoothed out

2016/07/12

• Additional references added
• Exploratory analyses performed
• Discussion section finished

2016/07/13

• Compiling issues addressed
• Specific points by reviewers addressed
• Conclusion section finished

2016/07/14

• Addressed all reviewer comments by line item
• Added final references
• Corrected reference format for submission
• Corrected figure size and text sizes therein
• Final proofread
• Submitted paper for further review

2016/08/30

• Addressed final round of reviewer comments

2016/10/19

• Made changes to match those made by editor during type setting