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REL: Release version 0.7.1 #136

Merged
merged 25 commits into from
May 22, 2020
Merged

REL: Release version 0.7.1 #136

merged 25 commits into from
May 22, 2020

Commits on May 22, 2020

  1. TST: Use subTest for sub-components of test

    @scottclowe
    scottclowe committed May 22, 2020
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  2. MNT: Tidy up test code

    @scottclowe
    scottclowe committed May 22, 2020
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  3. TST: Change neuropil tests to check convergence with many iter 

    and not to just test one iteration. The results of the previous
test were too stringent and changed when scikit-learn moved from
version 0.22.2.post1 to 0.23.0.
    @scottclowe
    scottclowe committed May 22, 2020
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  4. ENH: Load all polygon-like rois 

    All ROI types which possess x, y and n attributes are handled in
the same way as a polygon ROI, constructing a polygon using the
points supplied.
ROI types "freehand", "freeline", "multipoint", "point", "polygon",
"polyline", and "trace" are now handled correctly.
    @scottclowe
    scottclowe committed May 22, 2020
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  5. BUG: y-values of rectangle polygon co-ordinates 

    Co-ordinates in ImageJ have top at 0, so it should be
bottom = top + height. Previously it was as if bottom was at 0,
and the result was incorrect polygon y co-ordinates.
    @scottclowe
    scottclowe committed May 22, 2020
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  6. MNT: Load z from roi if possible, if not use 0

    @scottclowe
    scottclowe committed May 22, 2020
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  7. BUG: Fix oval ROI, with read-roi loader

    @scottclowe
    scottclowe committed May 22, 2020
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  8. BUG: Fix ellipse roi, with read-roi loader

    @scottclowe
    scottclowe committed May 22, 2020
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  9. MNT: Change Py2 ellipse to match Py3 behaviour

    @scottclowe
    scottclowe committed May 22, 2020
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  10. TST: Need to handle msg argument when using addTypeEqualityFunc 

    When we use `np.assert_all_close` using `self.assertEqual` as
declared with `addTypeEqualityFunc`, it is passed a `msg` argument
which `np.assert_all_close` doesn't accept. So we need to
ferry this argument away.
    @scottclowe
    scottclowe committed May 22, 2020
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  11. TST: Add assert_equal_dict_of_array 

    For checking two dictionaries of numpy.ndarrays are the same.
    @scottclowe
    scottclowe committed May 22, 2020
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  12. DOC: Add comment about rectangle roi

    @scottclowe
    scottclowe committed May 22, 2020
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  13. TST: Add resources and tests for readimagejrois

    @scottclowe
    scottclowe committed May 22, 2020
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  14. ENH: Support parsing singe roi from filename on Python 2

    @scottclowe
    scottclowe committed May 22, 2020
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  15. DEP: Bump skimage to >=0.13.0 

    This is when the rotation argument was added to
skimage.draw.ellipse.
    @scottclowe
    scottclowe committed May 22, 2020
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  16. MNT: Raise an error when reading point roi on Py2 

    We don't deal with the potential superresolution in the
pixel locations, and so the output is incorrect.
    @scottclowe
    scottclowe committed May 22, 2020
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  17. MNT: Add clear error message for rotated rectangle type on Py2

    @scottclowe
    scottclowe committed May 22, 2020
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  18. TST: Don't test some roi types on Python 2

    @scottclowe
    scottclowe committed May 22, 2020
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  19. CI: Disable suite2p tests 

    Their release is not compatible with the latest skimage==0.17.2.
    @scottclowe
    scottclowe committed May 22, 2020
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  20. TST+RF: Move test data set up into init, store on self

    @scottclowe
    scottclowe committed May 22, 2020
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  21. TST: Ensure npil.separate raises error on bad input

    @scottclowe
    scottclowe committed May 22, 2020
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  22. CI: Push to codecov with bash script, not python script 

    Having problems pushing with the python script (installed via pip)
and it seems like the big name python packages (numpy, pytest)
tend to use the bash script instead, which is working for them.
    @scottclowe
    scottclowe committed May 22, 2020
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  23. Merge branch 'bug_py3-rois' into rel_0.7.1

    @scottclowe
    scottclowe committed May 22, 2020
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  24. REL: Version 0.7.1

    @scottclowe
    scottclowe committed May 22, 2020
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  25. DOC: Add v0.7.1 to CHANGELOG

    @scottclowe
    scottclowe committed May 22, 2020
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