Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add support for population selection based on predictive/posterior probabilities in getSimulationEnrichmentMeans/Rates/Survival #30

Closed
wants to merge 34 commits into from
Closed
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
34 commits
Select commit Hold shift + click to select a range
3259b17
added r6 classes and modified code references
tilljensen Oct 30, 2023
a6a4249
added imports and generated doxygen2
tilljensen Nov 1, 2023
feedab5
added missing import
tilljensen Nov 1, 2023
353f177
fixed failing tests
tilljensen Nov 15, 2023
5f31130
Merge pull request #1 from rpact-com/dev/3.5.0
tilljensen Nov 15, 2023
6790e87
fixed summary
tilljensen Nov 29, 2023
27843ee
added proper object handling
tilljensen Nov 29, 2023
794394f
added R6 classes
tilljensen Jan 24, 2024
cd4ef07
added classes
tilljensen Feb 13, 2024
bebb1a8
changed filenames
tilljensen Feb 21, 2024
629cc16
removed redundant r6 occurences
tilljensen Feb 28, 2024
c95fa55
Merge branch 'dev/3.5.2' into dev/3.5.0
tilljensen Mar 6, 2024
a6494fa
.assertIsValidBeta improved
fpahlke Mar 12, 2024
2871f64
adjusted to 3.5.2
tilljensen Mar 14, 2024
3bfedb4
Delete load_source_files.R
tilljensen Mar 14, 2024
b3b14b4
Merge branch 'dev/3.5.0' into dev/4.0.0
tilljensen Mar 14, 2024
aa97d45
added r6 prefixes
tilljensen Mar 14, 2024
a488b32
removed old Rd files
tilljensen Mar 14, 2024
9d5f521
removed whitespace changes
tilljensen Mar 14, 2024
8a5d3b9
removed whitespace changes
tilljensen Mar 14, 2024
fd20471
removed whitespace changes
tilljensen Mar 14, 2024
94892f3
Merge pull request #29 from tilljensen/dev/4.0.0
fpahlke Mar 14, 2024
12e78b5
Code syntax style improved
fpahlke Mar 15, 2024
97b846b
DESCRIPTION updated
fpahlke Mar 15, 2024
782d909
Issue in FieldSet fixed
fpahlke Mar 15, 2024
63676ab
fixed SummaryItem
tilljensen Mar 20, 2024
dff71c7
Merge remote-tracking branch 'upstream/dev/4.0.0' into dev/4.0.0
tilljensen Mar 20, 2024
c54f1e7
Merge pull request #31 from tilljensen/dev/4.0.0
fpahlke Mar 22, 2024
c17286f
Outdated man pages removed
fpahlke Mar 22, 2024
4bc2642
Summary heading default base number set to -2L
fpahlke Mar 22, 2024
282fd54
Several issues fixed
fpahlke Mar 22, 2024
2edd396
Man pages improved
fpahlke Mar 22, 2024
65f7727
Issues in print outputs fixed
fpahlke Mar 26, 2024
f09af59
Man pages updated
fpahlke Mar 26, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
Package: rpact
Title: Confirmatory Adaptive Clinical Trial Design and Analysis
Version: 3.5.2.9232
Date: 2024-03-07
Version: 4.0.0.9236
Date: 2024-03-26
Authors@R: c(
person(
given = "Gernot",
Expand Down Expand Up @@ -55,6 +55,7 @@ Imports:
graphics,
tools,
rlang,
R6 (>= 2.5.1),
knitr (>= 1.19),
Rcpp (>= 1.0.3)
LinkingTo: Rcpp
Expand Down Expand Up @@ -92,6 +93,7 @@ Collate:
'class_design_plan.R'
'class_design_power_and_asn.R'
'class_event_probabilities.R'
'f_simulation_base_count_data.R'
'f_simulation_utilities.R'
'f_simulation_base_survival.R'
'class_simulation_results.R'
Expand Down
3 changes: 1 addition & 2 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -99,6 +99,7 @@ export(getSampleSizeCounts)
export(getSampleSizeMeans)
export(getSampleSizeRates)
export(getSampleSizeSurvival)
export(getSimulationCounts)
export(getSimulationEnrichmentMeans)
export(getSimulationEnrichmentRates)
export(getSimulationEnrichmentSurvival)
Expand Down Expand Up @@ -130,8 +131,6 @@ export(testPackage)
export(test_plan_section)
export(writeDataset)
export(writeDatasets)
exportMethods("[")
exportMethods(t)
import(graphics)
import(methods)
import(stats)
Expand Down
4 changes: 3 additions & 1 deletion NEWS.md
Original file line number Diff line number Diff line change
@@ -1,12 +1,14 @@

# rpact 3.5.2
# rpact 4.0.0

## New features

* Extension of the function `getPerformanceScore()` for sample size recalculation rules to the setting of binary endpoints according to [Bokelmann et al. (2024)](https://doi.org/10.1186/s12874-024-02150-4)
* The new functions `getSimulationCounts()` can be used to perform power simulations and the assessment of test characteristics for clinical trials with negative binomial distributed count data.

## Improvements, issues, and changes

* All reference classes were replaced by [R6](https://cran.r-project.org/package=R6) classes due to better performance
* Issue [#25](https://github.com/rpact-com/rpact/issues/25) fixed


Expand Down
Loading
Loading