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config: properly configure package manager commands
There was a missing `system_dnf5_command` option. The `dnf_command` (DNF4) is changed from /bin/dnf to /bin/dnf-3. The `/bin/dnf-3` script exists since ever and clearly denotes DNF4 (there used to be two suffixes, `-2` for Python 2 and `-3` for Python 3, but the `-3` clearly means the DNF4 written in Python). Doing the same for `system_dnf_command`. The `dnf_install_command` can be safely changed to install `python3-dnf` instead of dnf (which in the future will be provided by DNF5). This change is especially needed for hosts that have /bin/dnf symlink provided by dnf5. Relates: #1084
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