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The strain distribution pattern (SDP) panel in the plot of SNP association results doesn't seem to be working. See the 2nd-to-last figure in the user guide. There are supposed to be vertical lines at each SNP, but they're not showing. (Maybe they're just too thin to be viewed?)
The plot_sdp() example does seem to work.
The text was updated successfully, but these errors were encountered:
Seems to be an issue of snpinfo$snp vs snpinfo$snp_id. The latter is used to select the SNPs showing in the SDP panel, but former is used in other cases.
kbroman
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Mar 15, 2024
The strain distribution pattern (SDP) panel in the plot of SNP association results doesn't seem to be working. See the 2nd-to-last figure in the user guide. There are supposed to be vertical lines at each SNP, but they're not showing. (Maybe they're just too thin to be viewed?)
The
plot_sdp()
example does seem to work.The text was updated successfully, but these errors were encountered: