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  1. Bandage Bandage Public

    a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

    C++ 572 96

  2. Unicycler Unicycler Public

    hybrid assembly pipeline for bacterial genomes

    C++ 536 132

  3. Filtlong Filtlong Public

    quality filtering tool for long reads

    C++ 270 25

  4. Trycycler Trycycler Public

    A tool for generating consensus long-read assemblies for bacterial genomes

    Python 298 28

  5. Badread Badread Public

    a long read simulator that can imitate many types of read problems

    Python 150 20

  6. Polypolish Polypolish Public

    a short-read polishing tool for long-read assemblies

    Rust 137 9