Prevent crash from slash-containing contig names

rrwick · Feb 23, 2021 · b4f548d · b4f548d
1 parent 25b9768
commit b4f548d
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/trycycler/cluster.py b/trycycler/cluster.py
@@ -80,6 +80,8 @@ def check_input_assemblies(filenames):
         seqs = load_fasta(f)
         contig_names = set()
         for contig_name, _ in seqs:
+            if '/' in contig_name:
+                sys.exit(f'\nError: contig names cannot contain a slash character: {contig_name}')
             if contig_name in contig_names:
                 sys.exit(f'\nError: duplicate contig name: {contig_name}')
             contig_names.add(contig_name)

diff --git a/trycycler/version.py b/trycycler/version.py
@@ -14,4 +14,4 @@
 If not, see <http://www.gnu.org/licenses/>.
 """
 
-__version__ = '0.4.1'
+__version__ = '0.4.3'