Merge branch 'master' into pretty-ncol

.github/workflows/conventional-prs.yml

@@ -0,0 +1,16 @@
+name: PR
+on:
+  pull_request_target:
+    types:
+      - opened
+      - reopened
+      - edited
+      - synchronize
+
+jobs:
+  title-format:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: amannn/action-semantic-pull-request@v3.4.0
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/release-please.yml

@@ -0,0 +1,37 @@
+on:
+  push:
+    branches:
+      - master
+
+name: release-please
+
+jobs:
+  release-please:
+    runs-on: ubuntu-latest
+    steps:
+
+      - uses: GoogleCloudPlatform/release-please-action@v2
+        id: release
+        with:
+          release-type: rust
+          package-name: bio-types
+
+      - uses: actions/checkout@v2
+        if: ${{ steps.release.outputs.release_created }}
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        if: ${{ steps.release.outputs.release_created }}
+        with:
+          toolchain: stable
+          override: true
+
+      - uses: Swatinem/rust-cache@v1.3.0
+        if: ${{ steps.release.outputs.release_created }}
+
+      - name: Publish crate
+        if: ${{ steps.release.outputs.release_created }}
+        uses: actions-rs/cargo@v1
+        with:
+          command: publish
+          args: --token ${{ secrets.CRATES_IO_TOKEN }}

.github/workflows/rust.yml

@@ -0,0 +1,112 @@
+name: CI
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  Formatting:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+          components: rustfmt
+
+      - uses: Swatinem/rust-cache@v1.3.0
+
+      - name: Check format
+        run: cargo fmt -- --check
+
+  Linting:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+          components: clippy
+
+      - uses: Swatinem/rust-cache@v1.3.0
+
+      - name: Lint with clippy
+        uses: actions-rs/clippy-check@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+  Testing:
+    needs: Formatting
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        build: [linux, windows, macos]
+        include:
+          - build: macos
+            os: macos-latest
+            rust: stable
+          - build: windows
+            os: windows-latest
+            rust: stable
+          - build: linux
+            os: ubuntu-latest
+            rust: stable
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Install ${{ matrix.rust }} toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: ${{ matrix.rust }}
+          override: true
+
+      - uses: Swatinem/rust-cache@v1.3.0
+
+      - name: Run tests
+        uses: actions-rs/cargo@v1
+        with:
+          command: test
+          args: --all --no-fail-fast
+
+  Coverage:
+    needs: Formatting
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Install nightly toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+
+      - uses: Swatinem/rust-cache@v1.3.0
+
+      - name: Install cargo-tarpaulin
+        uses: actions-rs/install@v0.1
+        with:
+          crate: cargo-tarpaulin
+          version: latest
+          use-tool-cache: true
+
+      - name: Coverage with tarpaulin
+        run: cargo tarpaulin --all --all-features --timeout 600 --out Lcov -- --test-threads 1
+
+      - name: Upload coverage
+        uses: coverallsapp/github-action@master
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          path-to-lcov: ./lcov.info

CHANGELOG.md

@@ -0,0 +1,22 @@
+# Changelog
+
+## [0.13.0](https://www.github.com/rust-bio/rust-bio-types/compare/v0.12.1...v0.13.0) (2022-07-23)
+
+
+### Features
+
+* strand: Use serde ([#38](https://www.github.com/rust-bio/rust-bio-types/issues/38)) ([3fa1820](https://www.github.com/rust-bio/rust-bio-types/commit/3fa1820ec03165367b8c5025a6cf110fd968a81b))
+
+### [0.12.1](https://www.github.com/rust-bio/rust-bio-types/compare/v0.12.0...v0.12.1) (2021-11-17)
+
+
+### Bug Fixes
+
+* Fix `'\'` being rendered as ’' on docs.rs ([#31](https://www.github.com/rust-bio/rust-bio-types/issues/31)) ([ebbb67a](https://www.github.com/rust-bio/rust-bio-types/commit/ebbb67a3b4683a0584f869828223d622c1a502c6))
+
+## [0.12.0](https://www.github.com/rust-bio/rust-bio-types/compare/v0.11.0...v0.12.0) (2021-07-09)
+
+
+### Features
+
+* make AlignmentOperation hashable ([f1c4df0](https://www.github.com/rust-bio/rust-bio-types/commit/f1c4df09f0247ef76235f5ed6c17156535586b47))