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Adding tabs #2

Merged
merged 14 commits into from
Aug 23, 2016
Merged

Adding tabs #2

merged 14 commits into from
Aug 23, 2016

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dstreett
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@dstreett dstreett changed the base branch from master to develop August 19, 2016 13:24
@dstreett
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Tabs and Interleaved now. Someone mind looking over it before it goes into master?

void output_read_map_tab(const BitMap& read_map, T& out1) {
OutputWriter<ReadBase, ReadBaseOutTab> tabs(out1);
for(auto const &i : read_map) {
ReadBase* rb = dynamic_cast<ReadBase*>(i.second.get());
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no need to dynamic cast here, bitmap has readbases in it.

@joe-angell
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Yeah looks good dude, just a couple minor comments.

@@ -62,8 +62,8 @@ template <class T>
void output_read_map_tab(const BitMap& read_map, T& out1) {
OutputWriter<ReadBase, ReadBaseOutTab> tabs(out1);
for(auto const &i : read_map) {
ReadBase* rb = dynamic_cast<ReadBase*>(i.second.get());
tabs.write(*rb);
//ReadBase* rb = dynamic_cast<ReadBase*>(i.second.get());
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remove comment

@joe-angell
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looks good other than comment

@dstreett dstreett merged commit 111970e into develop Aug 23, 2016
@dstreett dstreett deleted the AddingTabs branch August 23, 2016 20:01
@msettles msettles mentioned this pull request Feb 20, 2017
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2 participants