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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 152 22

  2. paintera paintera Public

    Java 94 17

  3. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 33 9

  4. render render Public

    Render transformed image tiles

    Java 32 31

  5. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 23 14

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 17 10

Repositories

Showing 10 of 103 repositories
  • render Public

    Render transformed image tiles

    saalfeldlab/render’s past year of commit activity
    Java 32 GPL-2.0 31 29 4 Updated Jul 1, 2024
  • bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    saalfeldlab/bigwarp’s past year of commit activity
    Java 23 GPL-2.0 14 36 2 Updated Jun 28, 2024
  • hot-knife Public
    saalfeldlab/hot-knife’s past year of commit activity
    Java 4 GPL-2.0 7 1 2 Updated Jun 27, 2024
  • template-building Public

    Scripts and code relating to building anatomical templates.

    saalfeldlab/template-building’s past year of commit activity
    Jupyter Notebook 9 BSD-2-Clause 3 11 1 Updated Jun 26, 2024
  • paintera Public
    saalfeldlab/paintera’s past year of commit activity
    Java 94 GPL-2.0 17 78 (12 issues need help) 2 Updated Jun 24, 2024
  • saalfx Public

    SaalFX: Extensions and tools for JavaFX, extracted from Paintera

    saalfeldlab/saalfx’s past year of commit activity
    Kotlin 1 BSD-2-Clause 2 0 0 Updated Jun 24, 2024
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3’s past year of commit activity
    Java 5 BSD-2-Clause 6 3 1 Updated Jun 24, 2024
  • jitk-tps Public Forked from bogovicj/jitk-tps

    A java port of the ITK thin plate spline implementation.

    saalfeldlab/jitk-tps’s past year of commit activity
    Java 4 Apache-2.0 3 0 0 Updated Jun 17, 2024
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij’s past year of commit activity
    Java 14 BSD-2-Clause 8 15 (1 issue needs help) 1 Updated Jun 17, 2024
  • n5-utils Public

    simple standalone BigDataViewer for multiple N5 (or HDF5) datasets

    saalfeldlab/n5-utils’s past year of commit activity
    Java 8 16 13 0 Updated Jun 16, 2024
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