NCBI HomoloGene went offline, moved it to rescued repo

saezlab · Feb 6, 2024 · c257159 · c257159
1 parent ce9db8a
commit c257159
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/pypath/inputs/homologene.py b/pypath/inputs/homologene.py
@@ -36,7 +36,7 @@ def get_homologene():
     Returns file pointer.
     """
 
-    url = urls.urls['homologene']['url']
+    url = urls.urls['homologene']['url_rescued']
 
     c = curl.Curl(
         url = url,

diff --git a/pypath/resources/urls.py b/pypath/resources/urls.py
@@ -981,8 +981,9 @@
     },
     'homologene': {
         'label': 'NCBI HomoloGene data, recent release',
-        'url': 'https://ftp.ncbi.nih.gov/pub/HomoloGene/'
+        'url_original': 'https://ftp.ncbi.nih.gov/pub/HomoloGene/'
             'current/homologene.data',
+        'url_rescued': 'https://rescued.omnipathdb.org/homologene.data',
     },
     'mirbase' : {
         'label': 'miRBase: miRNA main reference database',