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temporary_file.py
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temporary_file.py
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"""
Temporary file handling
AUTHORS:
- Volker Braun, Jeroen Demeyer (2012-10-18): move these functions here
from sage/misc/misc.py and make them secure, see :trac:`13579`.
- Jeroen Demeyer (2013-03-17): add class:`atomic_write`,
see :trac:`14292`.
"""
#*****************************************************************************
# Copyright (C) 2012 Volker Braun <vbraun@stp.dias.ie>
# Copyright (C) 2012 Jeroen Demeyer <jdemeyer@cage.ugent.be>
#
# Distributed under the terms of the GNU General Public License (GPL)
# as published by the Free Software Foundation; either version 2 of
# the License, or (at your option) any later version.
# http://www.gnu.org/licenses/
#*****************************************************************************
import os
import tempfile
import atexit
def delete_tmpfiles():
"""
Remove the directory ``SAGE_TMP``.
TESTS:
This is automatically run when Sage exits, test this by running a
separate session of Sage::
sage: from sage.tests.cmdline import test_executable
sage: child_SAGE_TMP, err, ret = test_executable(["sage", "-c", "print SAGE_TMP"])
sage: err, ret
('', 0)
sage: os.path.exists(child_SAGE_TMP) # indirect doctest
False
The parent directory should exist::
sage: parent_SAGE_TMP = os.path.normpath(child_SAGE_TMP + '/..')
sage: os.path.isdir(parent_SAGE_TMP)
True
"""
import shutil
from sage.misc.misc import SAGE_TMP
shutil.rmtree(str(SAGE_TMP), ignore_errors=True)
# Run when Python shuts down
atexit.register(delete_tmpfiles)
#################################################################
# temporary directory
#################################################################
def tmp_dir(name="dir_", ext=""):
r"""
Create and return a temporary directory in
``$HOME/.sage/temp/hostname/pid/``
The temporary directory is deleted automatically when Sage exits.
INPUT:
- ``name`` -- (default: ``"dir_"``) A prefix for the directory name.
- ``ext`` -- (default: ``""``) A suffix for the directory name.
OUTPUT:
The absolute path of the temporary directory created, with a
trailing slash (or whatever the path separator is on your OS).
EXAMPLES::
sage: d = tmp_dir('dir_testing_', '.extension')
sage: d # random output
'/home/username/.sage/temp/hostname/7961/dir_testing_XgRu4p.extension/'
sage: os.chdir(d)
sage: _ = open('file_inside_d', 'w')
Temporary directories are unaccessible by other users::
sage: os.stat(d).st_mode & 0o077
0
"""
from sage.misc.misc import SAGE_TMP
tmp = tempfile.mkdtemp(prefix=name, suffix=ext, dir=str(SAGE_TMP))
name = os.path.abspath(tmp)
return name + os.sep
#################################################################
# temporary filename
#################################################################
def tmp_filename(name="tmp_", ext=""):
r"""
Create and return a temporary file in
``$HOME/.sage/temp/hostname/pid/``
The temporary file is deleted automatically when Sage exits.
.. warning::
If you need a particular file extension always use
``tmp_filename(ext=".foo")``, this will ensure that the file
does not yet exist. If you were to use
``tmp_filename()+".foo"``, then you might overwrite an
existing file!
INPUT:
- ``name`` -- (default: ``"tmp_"``) A prefix for the file name.
- ``ext`` -- (default: ``""``) A suffix for the file name. If you
want a filename extension in the usual sense, this should start
with a dot.
OUTPUT:
The absolute path of the temporary file created.
EXAMPLES::
sage: fn = tmp_filename('just_for_testing_', '.extension')
sage: fn # random
'/home/username/.sage/temp/hostname/8044/just_for_testing_tVVHsn.extension'
sage: _ = open(fn, 'w')
Temporary files are unaccessible by other users::
sage: os.stat(fn).st_mode & 0o077
0
"""
from sage.misc.misc import SAGE_TMP
handle, tmp = tempfile.mkstemp(prefix=name, suffix=ext, dir=str(SAGE_TMP))
os.close(handle)
name = os.path.abspath(tmp)
return name
def graphics_filename(ext='.png'):
"""
When run from the Sage notebook, return the next available canonical
filename for a plot/graphics file in the current working directory.
Otherwise, return a temporary file inside ``SAGE_TMP``.
INPUT:
- ``ext`` -- (default: ``".png"``) A file extension (including the dot)
for the filename.
OUTPUT:
The path of the temporary file created. In the notebook, this is
a filename without path in the current directory. Otherwise, this
an absolute path.
EXAMPLES::
sage: from sage.misc.temporary_file import graphics_filename
sage: print graphics_filename() # random, typical filename for sagenb
sage0.png
TESTS:
When doctesting, this returns instead a random temporary file.
We check that it's a file inside ``SAGE_TMP`` and that the extension
is correct::
sage: fn = graphics_filename(ext=".jpeg")
sage: fn.startswith(str(SAGE_TMP))
True
sage: fn.endswith('.jpeg')
True
Historically, it was also possible to omit the dot. This has been
changed in :trac:`16640` but it will still work for now::
sage: fn = graphics_filename("jpeg")
doctest:...: DeprecationWarning: extension must now include the dot
See http://trac.sagemath.org/16640 for details.
sage: fn.endswith('.jpeg')
True
"""
if ext[0] not in '.-':
from sage.misc.superseded import deprecation
deprecation(16640, "extension must now include the dot")
ext = '.' + ext
import sage.plot.plot
if sage.plot.plot.EMBEDDED_MODE:
# Don't use this unsafe function except in the notebook, #15515
i = 0
while os.path.exists('sage%d%s'%(i,ext)):
i += 1
filename = 'sage%d%s'%(i,ext)
return filename
else:
return tmp_filename(ext=ext)
#################################################################
# write to a temporary file and move it in place
#################################################################
class atomic_write:
"""
Write to a given file using a temporary file and then rename it
to the target file. This renaming should be atomic on modern
operating systems. Therefore, this class can be used to avoid race
conditions when a file might be read while it is being written.
It also avoids having partially written files due to exceptions
or crashes.
This is to be used in a ``with`` statement, where a temporary file
is created when entering the ``with`` and is moved in place of the
target file when exiting the ``with`` (if no exceptions occured).
INPUT:
- ``target_filename`` -- the name of the file to be written.
Normally, the contents of this file will be overwritten.
- ``append`` -- (boolean, default: False) if True and
``target_filename`` is an existing file, then copy the current
contents of ``target_filename`` to the temporary file when
entering the ``with`` statement. Otherwise, the temporary file is
initially empty.
EXAMPLES::
sage: from sage.misc.temporary_file import atomic_write
sage: target_file = tmp_filename()
sage: open(target_file, "w").write("Old contents")
sage: with atomic_write(target_file) as f:
....: f.write("New contents")
....: f.flush()
....: open(target_file, "r").read()
'Old contents'
sage: open(target_file, "r").read()
'New contents'
The name of the temporary file can be accessed using ``f.name``.
It is not a problem to close and re-open the temporary file::
sage: from sage.misc.temporary_file import atomic_write
sage: target_file = tmp_filename()
sage: open(target_file, "w").write("Old contents")
sage: with atomic_write(target_file) as f:
....: f.close()
....: open(f.name, "w").write("Newer contents")
sage: open(target_file, "r").read()
'Newer contents'
If an exception occurs while writing the file, the target file is
not touched::
sage: with atomic_write(target_file) as f:
....: f.write("Newest contents")
....: raise RuntimeError
Traceback (most recent call last):
...
RuntimeError
sage: open(target_file, "r").read()
'Newer contents'
Some examples of using the ``append`` option. Note that the file
is never opened in "append" mode, it is possible to overwrite
existing data::
sage: target_file = tmp_filename()
sage: with atomic_write(target_file, append=True) as f:
....: f.write("Hello")
sage: with atomic_write(target_file, append=True) as f:
....: f.write(" World")
sage: open(target_file, "r").read()
'Hello World'
sage: with atomic_write(target_file, append=True) as f:
....: f.seek(0)
....: f.write("HELLO")
sage: open(target_file, "r").read()
'HELLO World'
If the target file is a symbolic link, the link is kept and the
target of the link is written to::
sage: link_to_target = os.path.join(tmp_dir(), "templink")
sage: os.symlink(target_file, link_to_target)
sage: with atomic_write(link_to_target) as f:
....: f.write("Newest contents")
sage: open(target_file, "r").read()
'Newest contents'
Test writing twice to the same target file. The outermost ``with``
"wins"::
sage: open(target_file, "w").write(">>> ")
sage: with atomic_write(target_file, append=True) as f, \
....: atomic_write(target_file, append=True) as g:
....: f.write("AAA"); f.close()
....: g.write("BBB"); g.close()
sage: open(target_file, "r").read()
'>>> AAA'
"""
def __init__(self, target_filename, append=False):
"""
TESTS::
sage: from sage.misc.temporary_file import atomic_write
sage: link_to_target = os.path.join(tmp_dir(), "templink")
sage: os.symlink("/foobar", link_to_target)
sage: aw = atomic_write(link_to_target)
sage: print aw.target
/foobar
sage: print aw.tmpdir
/
"""
self.target = os.path.realpath(target_filename)
self.tmpdir = os.path.dirname(self.target)
self.append = append
def __enter__(self):
"""
Create and return a temporary file in ``self.tmpdir`` (normally
the same directory as the target file).
If ``self.append``, then copy the current contents of
``self.target`` to the temporary file.
OUTPUT: a file returned by :func:`tempfile.NamedTemporaryFile`.
TESTS::
sage: from sage.misc.temporary_file import atomic_write
sage: aw = atomic_write(tmp_filename())
sage: with aw as f:
....: os.path.dirname(aw.target) == os.path.dirname(f.name)
True
"""
self.tempfile = tempfile.NamedTemporaryFile(dir=self.tmpdir, delete=False)
self.tempname = self.tempfile.name
if self.append:
try:
r = open(self.target).read()
except IOError:
pass
else:
self.tempfile.write(r)
return self.tempfile
def __exit__(self, exc_type, exc_val, exc_tb):
"""
If the ``with`` block was successful, move the temporary file
to the target file. Otherwise, delete the temporary file.
TESTS:
Check that the temporary file is deleted if there was an
exception::
sage: from sage.misc.temporary_file import atomic_write
sage: with atomic_write(tmp_filename()) as f:
....: tempname = f.name
....: raise RuntimeError
Traceback (most recent call last):
...
RuntimeError
sage: os.path.exists(tempname)
False
"""
# Close the file (Python allows closing a closed file, so it's
# okay if the user already closed it).
self.tempfile.close()
if exc_type is None:
# Success: move temporary file to target file
try:
os.rename(self.tempname, self.target)
except OSError:
os.unlink(self.target)
os.rename(self.tempname, self.target)
else:
# Failure: delete temporary file
os.unlink(self.tempname)