Failing doctest - R installation broken?

[sagetrac-flint]

I'm working with Sage 4.7.2 under Linux 2.6.39-gentoo-[changeset:3 r3]. When I run the doctest

./sage -t devel/sage-main/sage/interfaces/r.py

I obtain the following error message:

sage -t  "devel/sage-main/sage/interfaces/r.py"             

---

File "/home/flint/sage-4.7.2/devel/sage-main/sage/interfaces/r.py", line 997:
    sage: r.library("lattice")
Exception raised:
    Traceback (most recent call last):
      File "/home/flint/sage-4.7.2/local/bin/ncadoctest.py", line 1231, in run_one_test
        self.run_one_example(test, example, filename, compileflags)
      File "/home/flint/sage-4.7.2/local/bin/sagedoctest.py", line 38, in run_one_example
        OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags)
      File "/home/flint/sage-4.7.2/local/bin/ncadoctest.py", line 1172, in run_one_example
        compileflags, 1) in test.globs
      File "<doctest !main!.example_37![7]>", line 1, in
        r.library("lattice")###line 997:
    sage: r.library("lattice")
      File "/home/flint/sage-4.7.2/local/lib/python/site-packages/sage/interfaces/r.py", line 572, in library
        raise ImportError, "%s"%ret
    ImportError: Loading required package: lattice
    Warning message:
    In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
      there is no package called 'lattice'

---

1 items had failures:
   1 of   9 in !main!.example_37
Test Failed 1 failures.
For whitespace errors, see the file /home/flint/.sage//tmp/r_3534.py
     [3.4 s]
 

The following tests failed:

    sage -t  "devel/sage-main/sage/interfaces/r.py"
Total time for all tests: 3.4 seconds

Depends on #12057

CC: @burcin

Component: packages: standard

Keywords: R, lattice, r-project

Reviewer: Burcin Erocal, Volker Braun

Issue created by migration from https://trac.sagemath.org/ticket/12065

[vbraun]

comment:1

Can you try #12057 ?

[vbraun]

Changed keywords from R, lattice to R, lattice, r-project

[sagetrac-flint]

comment:3

Thank you. This fixed my problem.

[burcin]

comment:4

Replying to @sagetrac-flint:

Thank you. This fixed my problem.

Volker, shall we close this as a duplicate and drop a note at #12057?

[vbraun]

comment:5

Fixed by #12057

[vbraun]

Dependencies: 12057

[vbraun]

Author: Volker Braun

[vbraun]

Reviewer: Burcin Erocal

[jdemeyer]

Changed author from Volker Braun to none

[jdemeyer]

Changed reviewer from Burcin Erocal to Burcin Erocal, Volker Braun

[jdemeyer]

Changed dependencies from 12057 to #12057