update scipy to 0.11.0

[jhpalmieri]

Version 0.11.0 of scipy was released on September 26, 2012. We should update: among other things, the new version builds out of the box on OS X Lion and OS X Mountain Lion.

The new version has two changes which affect doctests and Sage library code:

• the "order" argument for the Pade approximation for matrix exponentiation has been deprecated and no longer has any effect (except to print a deprecation message). So this requires fixing a doctest or two. I also removed any use of this argument from the Sage code.

• the function stats.ttest_ind seems to return its output in a slightly different format. So another doctest needs to be changed.

spkg: http://sage.math.washington.edu/home/palmieri/SPKG/scipy-0.11.0.spkg

Apply: attachment: trac_13541-doctest.patch

CC: @rbeezer

Component: packages: standard

Author: John Palmieri

Reviewer: Dmitrii Pasechnik

Merged: sage-5.4.1.rc0

Issue created by migration from https://trac.sagemath.org/ticket/13541

[jhpalmieri]

Attachment: trac_13541-scipy.patch.gz

patch for scipy spkg, for review only

[jhpalmieri]

Sage library

[jhpalmieri]

comment:1

Attachment: trac_13541-doctest.patch.gz

[dimpase]

comment:3

Great stuff! Positive review.

[jdemeyer]

Reviewer: Dmitrii Pasechnik

[jdemeyer]

comment:5

I assume the Sage library patch must be applied too?

[dimpase]

comment:6

Replying to @jdemeyer:

I assume the Sage library patch must be applied too?

No, I don't think there is any other patches to be applied.
Actaully, trac_13541-doctest.patch is misnamed. It contains patches to the Sage library, too.

[jdemeyer]

comment:7

Replying to @dimpase:

Replying to @jdemeyer:

I assume the Sage library patch must be applied too?

I meant: the patch must be applied in addition to the new spkg.

[dimpase]

comment:8

Replying to @jdemeyer:

Replying to @dimpase:

Replying to @jdemeyer:

I assume the Sage library patch must be applied too?

I meant: the patch must be applied in addition to the new spkg.

Oh yes, you are right. I didn't notice you changed the ticket description accordingly...

[jdemeyer]

Merged: sage-5.5.beta0

[jdemeyer]

Changed merged from sage-5.5.beta0 to sage-5.4.1.rc0