live documentation in sage notebook is broken

[videlec]

See https://groups.google.com/forum/#!topic/sage-devel/k1c4Ea4lH6o

Fixed in sagemath/sagenb@640cd65

Tarball: http://sage.ugent.be/www/jdemeyer/sage/sagenb-0.13.tar.bz2

Upstream: Completely fixed; Fix reported upstream

CC: @vbraun @kcrisman @jdemeyer

Component: notebook

Author: Jeroen Demeyer

Branch/Commit: 5a36e1e

Reviewer: François Bissey

Issue created by migration from https://trac.sagemath.org/ticket/20567

[jdemeyer]

Upstream: Completely fixed; Fix reported upstream

[jdemeyer]

Author: Jeroen Demeyer

[vbraun]

comment:3

Branch?

[jdemeyer]

Branch: u/jdemeyer/live_documentation_in_sage_notebook_is_broken

[jdemeyer]

New commits:

5a36e1e

Upgrade sagenb to version 0.13

[jdemeyer]

Commit: 5a36e1e

[kiwifb]

Reviewer: François Bissey

[kiwifb]

comment:6

Looks good to me.

[videlec]

comment:7

Actually, I installed the new package and try to ran the live documentation. I still got the same error

[Errno 2] No such file or directory: u'/opt/sage/local/share/doc/sage/html/en/thematic_tutorials/_static/default.css'
Traceback (most recent call last):
  File "/opt/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
    rv = self.dispatch_request()
  File "/opt/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
  File "/opt/sage/local/lib/python2.7/site-packages/sagenb-0.11.7-py2.7.egg/sagenb/flask_version/decorators.py", line 22, in wrapper
    return f(*args, **kwds)
  File "/opt/sage/local/lib/python2.7/site-packages/sagenb-0.11.7-py2.7.egg/sagenb/flask_version/doc.py", line 73, in doc_live
    return send_file(filename)
  File "/opt/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/helpers.py", line 520, in send_file
    file = open(filename, 'rb')
IOError: [Errno 2] No such file or directory: u'/opt/sage/local/share/doc/sage/html/en/thematic_tutorials/_static/default.css'

What is the procedure to properly reinstall the sage notebook?

For reference I did

$ git checkout -b sagenb
$ git fetch trac u/jdemeyer/live_documentation_in_sage_notebook_is_broken
$ git merge FETCH_HEAD
$ make build

Doing the above the package is not reinstalled. It seems that the script is actually stopped after "cunningham_tables"

checking package versions... 
    4ti2-1.6.7
    alabaster-0.7.7
    arb-2.8.1.p0
    atlas-3.10.2.p2
    autotools-20141105
    babel-2.2.0
    backports_abc-0.4
    backports_ssl_match_hostname-3.5.0.1
    benzene-20130630
    bliss-0.73
    boost_cropped-1.58.0
    brial-0.8.4.3
    buckygen-1.0
    bzip2-1.0.6-20150304
    cbc-2.9.4
    ccache-3.2.2
    cddlib-094g.p0
    cephes-2.8.p1
    certifi-2016.2.28
    cliquer-1.21.p3
    cmake-3.2.3
    combinatorial_designs-20140630
    compilerwrapper-1.2
    configure-162
    conway_polynomials-0.4.p0
    coxeter3-1.1
    cryptominisat-2.9.6
"/opt/sage/build/pkgs/cunningham_tables/type" is missing.
    csdp-6.2
"/opt/sage/build/pkgs/cunningham_tables/type" is missing.
"/opt/sage/build/pkgs/cunningham_tables/type" is missing.
"/opt/sage/build/pkgs/cunningham_tables/type" is missing.
"/opt/sage/build/pkgs/cunningham_tables/type" is missing.
checking that generated files are newer than configure... done

And there are other problems that we can read from the log

ln: failed to create symbolic link 'mathjax/mathjax': File exists

[kiwifb]

comment:8

I see you have /opt/sage/local/lib/python2.7/site-packages/sagenb-0.11.7-py2.7.egg those eggs files are becoming a problem.

[kiwifb]

comment:9

cunningham_tables is not an optional package I see in the sage tree, is this coming from another ticket?

[videlec]

comment:10

cunningham_tables is indeed some optional package. But whose installation just fails

$ sage -i cunningham_tables
...
cp: cannot create directory '/cunningham_tables': Permission denied
...

EDIT: related to #15813

[kiwifb]

comment:11

OK so your failure seems to be due to #15813, things should improve if you remove it.

[videlec]

comment:12

Indeed, cunningham_tables completely broke everything! Thanks for helping debugging.

[vbraun]

Changed branch from u/jdemeyer/live_documentation_in_sage_notebook_is_broken to 5a36e1e