Openblas testsuite fails on OSX #22100

vbraun · 2016-12-25T15:54:50Z

Fails with

gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o dblat2 dblat2.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
ld: file too small (length=0) file '../libopenblas_sandybridgep-r0.2.19.a' for architecture x86_64
collect2: error: ld returned 1 exit status
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o cblat2 cblat2.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
make[4]: *** [sblat1] Error 1

Depends on #22021

CC: @kiwifb

Component: linear algebra

Author: François Bissey

Branch/Commit: ea0c0f7

Reviewer: Volker Braun

Issue created by migration from https://trac.sagemath.org/ticket/22100

The text was updated successfully, but these errors were encountered:

vbraun · 2016-12-25T15:55:16Z

comment:1

More log

Successfully installed openblas-0.2.19.p0
Running the test suite for openblas-0.2.19.p0...
touch libopenblas_sandybridgep-r0.2.19.a
make -j 8 -C test all
make[4]: warning: -jN forced in submake: disabling jobserver mode.
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o sblat1 sblat1.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o dblat1 dblat1.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o cblat1 cblat1.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o zblat1 zblat1.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o sblat2 sblat2.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o dblat2 dblat2.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
ld: file too small (length=0) file '../libopenblas_sandybridgep-r0.2.19.a' for architecture x86_64
collect2: error: ld returned 1 exit status
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o cblat2 cblat2.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
make[4]: *** [sblat1] Error 1
ld: file too small (length=0) file '../libopenblas_sandybridgep-r0.2.19.a' for gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o zblat2 zblat2.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
architecture x86_64
collect2: error: ld returned 1 exit status
make[4]: *** [dblat1] Error 1
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o sblat3 sblat3.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
ld: file too small (length=0) file '../libopenblas_sandybridgep-r0.2.19.a' for architecture x86_64
collect2: error: ld returned 1 exit status
make[4]: *** [cblat1] Error 1
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o dblat3 dblat3.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
ld: file too small (length=0) file '../libopenblas_sandybridgep-r0.2.19.a' for architecture x86_64
collect2: error: ld returned 1 exit status
make[4]: *** [zblat1] Error 1
gfortran -m128bit-long-double -Wall -m64  -L/Users/buildslave-sage/slave/sage_git/build/local/lib -Wl,-rpath,/Users/buildslave-sage/slave/sage_git/build/local/lib  -o cblat3 cblat3.o ../libopenblas_sandybridgep-r0.2.19.a -lpthread -lgfortran -lpthread -lgfortran 
ld: file too small (length=0) file '../libopenblas_sandybridgep-r0.2.19.a' for architecture x86_64
collect2: error: ld returned 1 exit status
make[4]: *** [sblat2] Error 1

kiwifb · 2016-12-25T19:40:27Z

comment:2

OK, so spkg-install ran ok but no spkg-check is failing. For exactly the same reason and I should say at exactly the same point. This is because we already run the test suite of openblas in spkg-install as it seems to be part of the default target. And we have a failure in spkg-check because make was not run with the same arguments as in spkg-install - notably USE_THREAD=0. There are three things we could do at this stage:

fix spkg-install so the test suite is not run and make sure spkg-check is run with same options. Because there is no configuration as such the settings are not preserved from one run to another.
remove spkg-check and make a note that the test suite is run during spkg-install. By far the easiest solution.
status quo, fix spkg-check to use the same options as spkg-install and keep running the test suite in both spkg-install and spkg-check.

Other notes: this output means that the last patch I didn't forward upstream is what is needed to fix the build in #22021. A problem with ifdef, I cannot really forward that patch upstream without knowing precisely what shell was making it fail. I also would have to make the fix comprehensive over other makefile and possibly other use of ifdef.

vbraun · 2016-12-25T20:05:06Z

comment:3

FWIW I'm using the default shell on OSX, i.e. an ancient bash (version 3.2.57)

kiwifb · 2016-12-25T20:29:14Z

comment:4

Replying to @vbraun:

FWIW I'm using the default shell on OSX, i.e. an ancient bash (version 3.2.57)

OK when I make a PR upstream, I can say something about the environment. In the mean time, out of the three options, what do you favor?

vbraun · 2016-12-25T21:08:04Z

comment:5

Is there an easy way to not run the testsuite in spkg-install? then that would be nice to minimise install time. If not then I'd just remove spkg-check since its redundant...

kiwifb · 2016-12-25T21:44:05Z

comment:6

Replying to @vbraun:

Is there an easy way to not run the testsuite in spkg-install? then that would be nice to minimise install time. If not then I'd just remove spkg-check since its redundant...

The main makefile has

all :: libs netlib tests shared

so I am guessing we could call make on libs netlib shared. I'll put something together to try.

kiwifb · 2016-12-25T22:41:42Z

Commit: ea0c0f7

kiwifb · 2016-12-25T22:41:42Z

Dependencies: #22021

kiwifb · 2016-12-25T22:41:42Z

Author: François Bissey

kiwifb · 2016-12-25T22:41:42Z

comment:7

OK there it is. It obviously depends on #22021.

New commits:

`27f412b`	`Disable multi-threading in OpenBLAS`
`0266727`	`Fix a few QA in Openblas`
`ea0c0f7`	`run tests only in spkg-check. Also run spkg-check with the same options as spkg-install`

kiwifb · 2016-12-25T22:41:42Z

Branch: u/fbissey/openblas_tests

vbraun · 2016-12-25T23:07:27Z

Reviewer: Volker Braun

vbraun · 2016-12-25T23:07:27Z

comment:8

Thanks, lgtm!

vbraun · 2016-12-26T18:49:25Z

Changed branch from u/fbissey/openblas_tests to ea0c0f7

vbraun added this to the sage-7.5 milestone Dec 25, 2016

vbraun added c: linear algebra labels Dec 25, 2016

kiwifb added the s: needs review label Dec 25, 2016

vbraun added s: positive review and removed s: needs review labels Dec 25, 2016

vbraun removed the s: positive review label Dec 26, 2016

vbraun closed this as completed in 118f39d Dec 26, 2016

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Openblas testsuite fails on OSX #22100

Openblas testsuite fails on OSX #22100

vbraun commented Dec 25, 2016

vbraun commented Dec 25, 2016

kiwifb commented Dec 25, 2016

vbraun commented Dec 25, 2016

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vbraun commented Dec 25, 2016

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vbraun commented Dec 25, 2016

vbraun commented Dec 25, 2016

vbraun commented Dec 26, 2016

Openblas testsuite fails on OSX #22100

Openblas testsuite fails on OSX #22100

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vbraun commented Dec 25, 2016

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