Update pip, setuptools, wheel, tox, virtualenv and related packages for Sage 9.5 #32482

`d7161e8`	`build/pkgs/setuptools_scm: Update to 6.3.1`
`c03fd2c`	`build/pkgs/tox: Update to 3.24.3`
`cd402c4`	`build/pkgs/virtualenv: Update to 20.7.2`
`7d15f3f`	`build/pkgs/importlib_resources: Update to 5.2.2`
`23d5ea0`	`build/pkgs/pluggy: Update to 1.0.0`
`92ffb3a`	`build/pkgs/packaging: Update to 21.0`
`ea8b05f`	`build/pkgs/importlib_metadata: Update to 4.8.1`
`eaa5358`	`build/pkgs/pkgconfig: Update to 1.5.5`
`ac16b98`	`build/pkgs/six: Update to 1.16.0`
`4b1a1af`	`build/pkgs/wheel: Update to 0.37.0`

sagetrac-git · 2021-09-06T19:39:39Z

Changed commit from 80ad6ba to 4b1a1af

mkoeppe · 2021-09-06T19:42:47Z

comment:4

Our patch build/pkgs/setuptools/patches/distutils-big-sur-6511bf56.patch (workaround for MACOSX_DEPLOYMENT_TARGET=11, added in #31335) no longer applies. The code has changed a lot and is now in (https://github.com/pypa/setuptools/blob/1ba66c1d79bf2e89d1d7be426bde60298c9439cd/setuptools/_distutils/util.py#L140). I don't see the workaround reflected by the new code.

mkoeppe · 2021-09-06T19:50:14Z

comment:5

(from #31335 comment:36)
Upstream cpython issue: https://bugs.python.org/issue42504

mkoeppe · 2021-09-06T19:59:20Z

comment:6

apparently fixed in upstream cpython 3.10 (python/cpython#24341), 3.9.2 (python/cpython#24410), 3.8.10 (python/cpython#25806)

sagetrac-git · 2021-09-06T20:06:48Z

Branch pushed to git repo; I updated commit sha1. New commits:

`0f7da4f`	`build/pkgs/setuptools/patches/distutils-big-sur-6511bf56.patch: Remove`

sagetrac-git · 2021-09-06T20:06:48Z

Changed commit from 4b1a1af to 0f7da4f

sagetrac-git · 2021-09-06T20:38:54Z

Branch pushed to git repo; I updated commit sha1. New commits:

`59132ab`	`build/pkgs/tomli: New, dependency of setuptools_scm`
`7ebcb6c`	`build/pkgs/setuptools_scm/dependencies: Add packaging`
`2def651`	`build/pkgs/{packaging,pyparsing,setuptools_scm}/dependencies: Avoid circular deps`

sagetrac-git · 2021-09-06T20:38:54Z

Changed commit from 0f7da4f to 2def651

mkoeppe · 2021-09-06T20:42:29Z

comment:9

Running into a strange circular dependency for packaging

packaging-21.0] Installing packaging-21.0
[packaging-21.0] Processing /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/var/tmp/sage/build/packaging-21.0/src
[packaging-21.0]     Preparing wheel metadata: started
[packaging-21.0]     Running command /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/bin/python3 /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gp/T/tmpk9l4wmep
[packaging-21.0]     Traceback (most recent call last):
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 349, in <module>
[packaging-21.0]         main()
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 331, in main
[packaging-21.0]         json_out['return_val'] = hook(**hook_input['kwargs'])
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 151, in prepare_metadata_for_build_wheel
[packaging-21.0]         return hook(metadata_directory, config_settings)
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/build_meta.py", line 166, in prepare_metadata_for_build_wheel
[packaging-21.0]         self.run_setup()
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/build_meta.py", line 150, in run_setup
[packaging-21.0]         exec(compile(code, __file__, 'exec'), locals())
[packaging-21.0]       File "setup.py", line 40, in <module>
[packaging-21.0]         setup(
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/__init__.py", line 153, in setup
[packaging-21.0]         return distutils.core.setup(**attrs)
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 108, in setup
[packaging-21.0]         _setup_distribution = dist = klass(attrs)
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/dist.py", line 450, in __init__
[packaging-21.0]         _Distribution.__init__(
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 293, in __init__
[packaging-21.0]         self.finalize_options()
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/dist.py", line 827, in finalize_options
[packaging-21.0]         for ep in sorted(loaded, key=by_order):
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/setuptools/dist.py", line 826, in <lambda>
[packaging-21.0]         loaded = map(lambda e: e.load(), filtered)
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pkg_resources/__init__.py", line 2449, in load
[packaging-21.0]         self.require(*args, **kwargs)
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pkg_resources/__init__.py", line 2472, in require
[packaging-21.0]         items = working_set.resolve(reqs, env, installer, extras=self.extras)
[packaging-21.0]       File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pkg_resources/__init__.py", line 772, in resolve
[packaging-21.0]         raise DistributionNotFound(req, requirers)
[packaging-21.0]     pkg_resources.DistributionNotFound: The 'packaging>=20.0' distribution was not found and is required by the application
[packaging-21.0]     Preparing wheel metadata: finished with status 'error'
[packaging-21.0] WARNING: Discarding file:///Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/var/tmp/sage/build/packaging-21.0/src. Command errored out with exit status 1: /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/bin/python3 /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gp/T/tmpk9l4wmep Check the logs for full command output.
[packaging-21.0] ERROR: Command errored out with exit status 1: /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/bin/python3 /Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/local/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gp/T/tmpk9l4wmep Check the logs for full command output.
[packaging-21.0] ********************************************************************************
[packaging-21.0] Error building a wheel for packaging-21.0

mkoeppe · 2021-09-06T20:48:59Z

comment:10

This went away by doing make setuptools_scm-clean

mkoeppe · 2021-09-06T20:53:10Z

Reviewer: https://github.com/mkoeppe/sage/actions/runs/1207212805, https://github.com/mkoeppe/sage/actions/runs/1207212806

mkoeppe · 2021-09-06T20:53:10Z

Author: Matthias Koeppe

mkoeppe · 2021-09-07T00:42:45Z

comment:12

  [tomli-1.2.1]   ModuleNotFoundError: No module named 'flit_core'

mkoeppe · 2021-09-07T00:45:06Z

comment:13

... so need #32483 or #31280

mkoeppe · 2021-09-09T03:29:05Z

Dependencies: #31280, #32493

sagetrac-git · 2021-09-09T03:29:57Z

Changed commit from 2def651 to aceeeeb

sagetrac-git · 2021-09-09T03:29:57Z

Branch pushed to git repo; I updated commit sha1. Last 10 new commits:

`e2fb5ce`	`build/pkgs/ipywidgets: Update to 7.6.4`
`3e2fb34`	`Merge #31280`
`00f06a6`	`build/pkgs/{bleach,html5lib,importlib_resources,sagenb_export}/dependencies: Add missing deps`
`ac8bce8`	`Merge #31280`
`a15e3eb`	`build/pkgs/{flit_core,jupyterlab_pygments,matplotlib_inline,nbclient,nbconvert}/dependencies: Add missing deps`
`dc094c0`	`build/pkgs/{ipykernel,nbconvert}/dependencies: Add missing deps`
`c929321`	`build/pkgs/nbclient/dependencies: fixup`
`41224af`	`build/pkgs/nbconvert/dependencies: Add missing dep`
`0fc01d3`	`build/pkgs/zipp: Update to 3.5.0`
`aceeeeb`	`Merge #32493`

sagetrac-git · 2021-09-09T03:32:26Z

Changed commit from aceeeeb to bf15a7b

sagetrac-git · 2021-09-09T03:32:26Z

Branch pushed to git repo; I updated commit sha1. New commits:

`bf15a7b`	`build/pkgs/tomli/dependencies: Add flit_core`

sagetrac-git · 2021-09-09T03:49:44Z

Changed commit from bf15a7b to f10ea0b

sagetrac-git · 2021-09-09T03:49:44Z

Branch pushed to git repo; I updated commit sha1. New commits:

`432699d`	`build/pkgs/flit_core/dependencies: Remove dep on toml again, replace PYTHON_TOOLCHAIN by pip only, to break circular dep`
`f10ea0b`	`build/pkgs/tomli/dependencies: Replace PYTHON_TOOLCHAIN by pip only, to break circular dep`

sagetrac-git · 2021-09-09T03:54:17Z

Changed commit from f10ea0b to 4bdbddd

sagetrac-git · 2021-09-09T03:54:17Z

Branch pushed to git repo; I updated commit sha1. New commits:

`4bdbddd`	`build/pkgs/tomli/dependencies: Add toml because flit_core needs it at its runtime`

mkoeppe · 2021-09-09T04:59:20Z

Changed reviewer from https://github.com/mkoeppe/sage/actions/runs/1207212805, https://github.com/mkoeppe/sage/actions/runs/1207212806 to none

sagetrac-git · 2021-09-14T02:08:39Z

Branch pushed to git repo; I updated commit sha1. New commits:

`6b64599`	`Merge tag '9.5.beta1' into t/32482/update_pip_to_21_2_4`

sagetrac-git · 2021-09-14T02:08:39Z

Changed commit from 4bdbddd to 6b64599

mkoeppe · 2021-09-14T02:09:10Z

Changed dependencies from #31280, #32493 to #32493

mkoeppe · 2021-09-14T02:19:15Z

Reviewer: https://github.com/mkoeppe/sage/actions/runs/1231955852, https://github.com/mkoeppe/sage/actions/runs/1231955857, https://github.com/mkoeppe/sage/actions/runs/1231955859

jhpalmieri · 2021-09-15T20:04:42Z

Changed reviewer from https://github.com/mkoeppe/sage/actions/runs/1231955852, https://github.com/mkoeppe/sage/actions/runs/1231955857, https://github.com/mkoeppe/sage/actions/runs/1231955859 to John Palmieri

jhpalmieri · 2021-09-15T20:04:42Z

comment:24

This looks good to me.

mkoeppe · 2021-09-15T21:23:18Z

comment:25

Thank you!

vbraun · 2021-09-19T09:57:57Z

Changed branch from u/mkoeppe/update_pip_to_21_2_4 to 6b64599

mkoeppe added this to the sage-9.5 milestone Sep 6, 2021

mkoeppe added c: packages: standard labels Sep 6, 2021

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mkoeppe changed the title ~~Update pip to 21.2.4~~ Update pip, setuptools, wheel, tox, virtualenv and related packages for Sage 9.5 Sep 6, 2021

mkoeppe added the s: needs review label Sep 6, 2021

mkoeppe added s: needs work and removed s: needs review labels Sep 7, 2021

mkoeppe added s: needs review and removed s: needs work labels Sep 9, 2021

jhpalmieri added s: positive review and removed s: needs review labels Sep 15, 2021

vbraun removed the s: positive review label Sep 19, 2021

vbraun closed this as completed in 3d02cb2 Sep 19, 2021

mkoeppe mentioned this issue Apr 25, 2022

Upgrade virtualenv, fix missing dependencies #33746

Closed

Update pip, setuptools, wheel, tox, virtualenv and related packages for Sage 9.5 #32482

Update pip, setuptools, wheel, tox, virtualenv and related packages for Sage 9.5 #32482

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