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Update sphinx to 4.4 #33272

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antonio-rojas opened this issue Feb 1, 2022 · 69 comments
Closed

Update sphinx to 4.4 #33272

antonio-rojas opened this issue Feb 1, 2022 · 69 comments

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@antonio-rojas
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Throws warnings (which abort the doc build) when a role can be used but it's not.

CC: @kiwifb @tobihan @collares @kwankyu

Component: packages: standard

Author: Antonio Rojas, François Bissey

Branch/Commit: 17fa6d4

Reviewer: Kwankyu Lee

Issue created by migration from https://trac.sagemath.org/ticket/33272

@antonio-rojas antonio-rojas added this to the sage-9.6 milestone Feb 1, 2022
@antonio-rojas
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Branch: u/arojas/update_sphinx_to_4_4

@antonio-rojas
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Commit: e14fe07

@antonio-rojas

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@antonio-rojas
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Author: Antonio Rojas

@antonio-rojas
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New commits:

97d7958Use roles when possible to fix warnings
e14fe07Update Sphinx to 4.4.0

@mkoeppe
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mkoeppe commented Feb 3, 2022

comment:3

The changes in build/ and pkgs/ are not good because they are intended to be readable also by themselves, without running them through our Sphinx docbuild. For example, the pkgs/*/README.rst appear on PyPI.

@mkoeppe
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mkoeppe commented Feb 3, 2022

comment:4

Perhaps these substitutions can be made in the src/doc/bootstrap script

@kiwifb
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kiwifb commented Feb 4, 2022

comment:6

Upgrade to sphinx 4.3.1 (#32968) is currently being merged by Volker and will be in the next beta. So this ticket will need rebasing on top of it. And I am surprised you don't seem to need sagemath/sagetrac-mirror@fc84f82 - but looking more closely, all your work with changing external references around may be helping with that. We may need careful navigating around that line.

@antonio-rojas
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comment:7

Replying to @kiwifb:

Upgrade to sphinx 4.3.1 (#32968) is currently being merged by Volker and will be in the next beta.

Yes, I'm aware. This was tested and needs to be merged on top of that. I will rebase after the next beta.

@sagetrac-git
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sagetrac-git mannequin commented Feb 7, 2022

Changed commit from e14fe07 to 489ad27

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sagetrac-git mannequin commented Feb 7, 2022

Branch pushed to git repo; I updated commit sha1. New commits:

489ad27Merge remote-tracking branch 'origin' into t/33272/update_sphinx_to_4_4

@collares
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comment:9

Note that these warnings will probably be disabled by default in Sphinx 4.4.1: sphinx-doc/sphinx#10126

@kiwifb
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kiwifb commented Feb 20, 2022

comment:10

Trying this in sage-on-gentoo since sphinx-4.4.0 is now stable. I get

[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/_bootstrap.rst:111: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/admcycles.rst:44: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/alabaster.rst:69: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/appnope.rst:49: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/argcomplete.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/argon2_cffi.rst:56: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/attrs.rst:70: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/awali.rst:67: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/babel.rst:64: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/backcall.rst:52: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/barvinok.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/beautifulsoup4.rst:60: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/beniget.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/benzene.rst:68: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/biopython.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/bleach.rst:68: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/bliss.rst:76: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/buckygen.rst:67: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/ccache.rst:77: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/certifi.rst:75: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cffi.rst:73: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/charset_normalizer.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cocoalib.rst:52: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/combinatorial_designs.rst:64: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/configure.rst:56: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/conway_polynomials.rst:55: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cppy.rst:48: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cryptominisat.rst:76: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/csdp.rst:83: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cunningham_tables.rst:30: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cvxopt.rst:101: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cycler.rst:74: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cypari.rst:61: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cysignals.rst:60: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/cython.rst:96: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/d3js.rst:61: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_cremona_ellcurve.rst:75: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_jones_numfield.rst:54: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_knotinfo.rst:44: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_kohel.rst:37: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_mutation_class.rst:56: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_odlyzko_zeta.rst:39: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_stein_watkins.rst:50: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_stein_watkins_mini.rst:50: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/database_symbolic_data.rst:70: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/dateutil.rst:74: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/debugpy.rst:44: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/decorator.rst:59: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/deformation.rst:46: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/defusedxml.rst:76: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/docutils.rst:93: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/dot2tex.rst:92: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/e_antic.rst:52: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/elliptic_curves.rst:66: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/entrypoints.rst:68: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/flit_core.rst:49: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/fonttools.rst:44: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/fpylll.rst:61: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/fricas.rst:50: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/frobby.rst:65: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/gambit.rst:61: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/gap.rst:116: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/gap3.rst:107: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/gap_jupyter.rst:56: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/gap_packages.rst:177: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
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[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/sphinxcontrib_qthelp.rst:57: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/sphinxcontrib_serializinghtml.rst:64: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/sphinxcontrib_websupport.rst:58: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/sqlalchemy.rst:66: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/surf.rst:70: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/surface_dynamics.rst:42: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/symengine.rst:79: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/symengine_py.rst:53: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/sympy.rst:84: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/tdlib.rst:63: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/terminado.rst:57: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/testpath.rst:53: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/texttable.rst:65: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/thebe.rst:61: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/threejs.rst:60: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/tides.rst:57: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/tomli.rst:49: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/topcom.rst:71: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/tornado.rst:75: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/traitlets.rst:70: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/typing_extensions.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/tzlocal.rst:59: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/urllib3.rst:51: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/valgrind.rst:102: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/vcversioner.rst:70: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/wcwidth.rst:70: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/webencodings.rst:75: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/wheel.rst:71: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/widgetsnbextension.rst:87: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/zipp.rst:68: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/29023' could be replaced by an extlink (try using ':trac:`ticket/29023`' instead)
[spkg     ] The inventory files are in ../../../build_doc/inventory/en/reference/spkg.
Error building the documentation.
Traceback (most recent call last):
  File "/usr/lib/python3.10/runpy.py", line 196, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/usr/lib/python3.10/runpy.py", line 86, in _run_code
    exec(code, run_globals)
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__main__.py", line 2, in <module>
    main()
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__init__.py", line 1741, in main
    builder()
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__init__.py", line 781, in _wrapper
    getattr(DocBuilder, build_type)(self, *args, **kwds)
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__init__.py", line 136, in f
    runsphinx()
  File "/usr/lib/python3.10/site-packages/sage_docbuild/sphinxbuild.py", line 326, in runsphinx
    sys.stderr.raise_errors()
  File "/usr/lib/python3.10/site-packages/sage_docbuild/sphinxbuild.py", line 262, in raise_errors
    raise OSError(self._error)
OSError: /dev/shm/portage/sci-mathematics/sage-doc-9999/work/sage-doc-9999/src/doc/en/reference/spkg/_bootstrap.rst:111: WARNING: hardcoded link 'https://github.com/sagemath/sage-prod/issues/27330' could be replaced by an extlink (try using ':trac:`ticket/27330`' instead)

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kiwifb commented Feb 20, 2022

Changed branch from u/arojas/update_sphinx_to_4_4 to u/fbissey/sphinx-4.4

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kiwifb commented Feb 20, 2022

Changed commit from 489ad27 to c839fe7

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kiwifb commented Feb 20, 2022

comment:11

Still building, have trouble with stuff coming from #33309 at the same time on the branch Volker is merging tickets. But that got rid of all those so called warnings that break the build.


New commits:

42c636eMerge branch 'develop' into sphinx-4.4
c839fe7convert all links to trac to extlink during bootstrap

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kiwifb commented Feb 20, 2022

comment:12

Build failed on pdf with some undefined references. Will try html only to see if that works.

  Citation `algebraic_combinatorics/tsetlin_library:aks2013' on page 32 undefined on input line 1003
  Citation `algebraic_combinatorics/tsetlin_library:bidigare1997' on page 32 undefined on input line 999
  Citation `algebraic_combinatorics/tsetlin_library:brown2000' on page 32 undefined on input line 1000
  Citation `algebraic_combinatorics:stanley2013' on page 25 undefined on input line 541
  Citation `algebraic_combinatorics:stanley2013' on page 27 undefined on input line 651
  Citation `algebraic_combinatorics:stanley2013' on page 32 undefined on input line 1011
  Citation `lie/bibliography:bourbaki46' on page 134 undefined on input line 9789
  Citation `lie/bibliography:bourbaki46' on page 134 undefined on input line 9791
  Citation `lie/bibliography:bourbaki46' on page 134 undefined on input line 9802
  Citation `lie/bibliography:bumpnakasuji2010' on page 171 undefined on input line 12819
  Citation `lie/bibliography:carrell1994' on page 171 undefined on input line 12807
  Citation `lie/bibliography:deodhar1977' on page 171 undefined on input line 12811
  Citation `lie/bibliography:dyer1993' on page 171 undefined on input line 12815
  Citation `lie/bibliography:dynkin1952' on page 152 undefined on input line 11245
  Citation `lie/bibliography:fauseretal2006' on page 152 undefined on input line 11223
  Citation `lie/bibliography:fourieretal2009' on page 198 undefined on input line 14967
  Citation `lie/bibliography:fourieretal2009' on page 198 undefined on input line 14974
  Citation `lie/bibliography:fourieretal2010' on page 210 undefined on input line 15516
  Citation `lie/bibliography:fulton1997' on page 174 undefined on input line 13054
  Citation `lie/bibliography:hatayamaetal2001' on page 198 undefined on input line 14972
  Citation `lie/bibliography:hongkang2002' on page 142 undefined on input line 10461
  Citation `lie/bibliography:hongkang2002' on page 176 undefined on input line 13199
  Citation `lie/bibliography:hongkang2002' on page 179 undefined on input line 13440
  Citation `lie/bibliography:hongkang2002' on page 210 undefined on input line 15515
  Citation `lie/bibliography:hongkang2002' on page 210 undefined on input line 15553
  Citation `lie/bibliography:honglee2008' on page 218 undefined on input line 16017
  Citation `lie/bibliography:howeetal2005' on page 152 undefined on input line 11231
  Citation `lie/bibliography:iwahori1964' on page 225 undefined on input line 16349
  Citation `lie/bibliography:jaynemisra2014' on page 197 undefined on input line 14926
  Citation `lie/bibliography:jimbo1986' on page 175 undefined on input line 13180
  Citation `lie/bibliography:jonesetal2010' on page 207 undefined on input line 15405
  Citation `lie/bibliography:joseph1995' on page 216 undefined on input line 15893
  Citation `lie/bibliography:joseph1995' on page 216 undefined on input line 15894
  Citation `lie/bibliography:kac' on page 134 undefined on input line 9791
  Citation `lie/bibliography:kac' on page 142 undefined on input line 10422
  Citation `lie/bibliography:kac' on page 142 undefined on input line 10425
  Citation `lie/bibliography:kac' on page 142 undefined on input line 10461
  Citation `lie/bibliography:kac' on page 187 undefined on input line 14081
  Citation `lie/bibliography:kac' on page 188 undefined on input line 14098
  Citation `lie/bibliography:kac' on page 188 undefined on input line 14162
  Citation `lie/bibliography:kac' on page 190 undefined on input line 14279
  Citation `lie/bibliography:kac' on page 191 undefined on input line 14413
  Citation `lie/bibliography:kac' on page 191 undefined on input line 14422
  Citation `lie/bibliography:kac' on page 191 undefined on input line 14429
  Citation `lie/bibliography:kac' on page 191 undefined on input line 14450
  Citation `lie/bibliography:kac' on page 192 undefined on input line 14470
  Citation `lie/bibliography:kac' on page 195 undefined on input line 14698
  Citation `lie/bibliography:kac' on page 195 undefined on input line 14702
  Citation `lie/bibliography:kac' on page 195 undefined on input line 14726
  Citation `lie/bibliography:kac' on page 195 undefined on input line 14754
  Citation `lie/bibliography:kacpeterson' on page 195 undefined on input line 14724
  Citation `lie/bibliography:kacpeterson' on page 195 undefined on input line 14755
  Citation `lie/bibliography:kacpeterson' on page 197 undefined on input line 14898
  Citation `lie/bibliography:kashiwara1993' on page 214 undefined on input line 15772
  Citation `lie/bibliography:kashiwara1993' on page 215 undefined on input line 15839
  Citation `lie/bibliography:kashiwara1993' on page 217 undefined on input line 15965
  Citation `lie/bibliography:kashiwara1995' on page 176 undefined on input line 13191
  Citation `lie/bibliography:kashiwara1995' on page 214 undefined on input line 15773
  Citation `lie/bibliography:kashiwara1995' on page 217 undefined on input line 15965
  Citation `lie/bibliography:kashiwaranakashima1994' on page 176 undefined on input line 13195
  Citation `lie/bibliography:kashiwaranakashima1994' on page 179 undefined on input line 13439
  Citation `lie/bibliography:kimleeoh2017' on page 197 undefined on input line 14926
  Citation `lie/bibliography:kimshin2010' on page 221 undefined on input line 16117
  Citation `lie/bibliography:king1975' on page 152 undefined on input line 11227
  Citation `lie/bibliography:kkmmnn1992' on page 210 undefined on input line 15552
  Citation `lie/bibliography:kks2007' on page 213 undefined on input line 15719
  Citation `lie/bibliography:kks2007' on page 223 undefined on input line 16248
  Citation `lie/bibliography:kmps' on page 187 undefined on input line 14082
  Citation `lie/bibliography:kmps' on page 192 undefined on input line 14471
  Citation `lie/bibliography:kmps' on page 194 undefined on input line 14648
  Citation `lie/bibliography:kmps' on page 194 undefined on input line 14666
  Citation `lie/bibliography:kmps' on page 194 undefined on input line 14670
  Citation `lie/bibliography:kmps' on page 197 undefined on input line 14898
  Citation `lie/bibliography:knuth1970' on page 174 undefined on input line 13050
  Citation `lie/bibliography:knuth1998' on page 174 undefined on input line 13046
  Citation `lie/bibliography:l1995' on page 212 undefined on input line 15657
  Citation `lie/bibliography:lnsss14i' on page 209 undefined on input line 15479
  Citation `lie/bibliography:lnsss14ii' on page 209 undefined on input line 15479
  Citation `lie/bibliography:macdonald2003' on page 190 undefined on input line 14280
  Citation `lie/bibliography:mckaypatera1981' on page 152 undefined on input line 11235
  Citation `lie/bibliography:mckaypatera1981' on page 165 undefined on input line 12377
  Citation `lie/bibliography:okadoschilling2008' on page 198 undefined on input line 14973
  Citation `lie/bibliography:rubenthaler2008' on page 163 undefined on input line 12260
  Citation `lie/bibliography:salisburyscrimshaw2015' on page 225 undefined on input line 16312
  Citation `lie/bibliography:schilling2006' on page 225 undefined on input line 16311
  Citation `lie/bibliography:schillingtingley2011' on page 211 undefined on input line 15582
  Citation `lie/bibliography:seitz1991' on page 163 undefined on input line 12269
  Citation `lie/bibliography:seitz1991' on page 164 undefined on input line 12290
  Citation `lie/bibliography:seitz1991' on page 164 undefined on input line 12294
  Citation `lie/bibliography:stanley1999' on page 174 undefined on input line 13058
  Citation `lie/bibliography:testerman1989' on page 163 undefined on input line 12232
  Citation `lie/bibliography:testerman1992' on page 164 undefined on input line 12306
  Citation `sandpile:bn' on page 35 undefined on input line 1187
  Citation `sandpile:bn' on page 41 undefined on input line 1637
  Citation `sandpile:btw' on page 40 undefined on input line 1583
  Citation `sandpile:crs' on page 43 undefined on input line 1786
  Citation `sandpile:h' on page 35 undefined on input line 1185
  Citation `sandpile:levine2014' on page 72 undefined on input line 4280
  Citation `sandpile:levine2014' on page 83 undefined on input line 5232
  Citation `sandpile:ppw2013' on page 35 undefined on input line 1187

Overfull \vbox (2.72194pt too high) detected at line 17996
[223] [74] [2985] [75] [2986] [224] [76]
Underfull \hbox (badness 10000) in paragraph at lines 286330--286332
[]\T1/qtm/m/n/10 Bases: [][]\T1/txtt/m/n/10 sage.structure.unique_representatio
n.UniqueRepresentation[][]\T1/qtm/m/n/10 , [][]\T1/txtt/m/n/10 sage.structure.
 [77[2987]] [225 [78]]
Chapter 14.
 [2988] [226[79]]Latexmk: Summary of warnings from last run of *latex:
  Latex failed to resolve 102 citation(s)
Latexmk: Errors, so I did not complete making targets
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'thematic_tutorials.log' for details
Latexmk: Use the -f option to force complete processing,
 unless error was exceeding maximum runs, or warnings treated as errors.
make[2]: *** [Makefile:29: thematic_tutorials.pdf] Error 12
make[2]: Leaving directory '/dev/shm/portage/sci-mathematics/sage-doc-9999/work/build_doc/latex/en/thematic_tutorials'
Error building the documentation.
Traceback (most recent call last):
  File "/usr/lib/python3.10/runpy.py", line 196, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/usr/lib/python3.10/runpy.py", line 86, in _run_code
    exec(code, run_globals)
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__main__.py", line 2, in <module>
    main()
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__init__.py", line 1745, in main
    builder()
  File "/usr/lib/python3.10/site-packages/sage_docbuild/__init__.py", line 270, in pdf
    raise RuntimeError(error_message % (command, tex_dir))
RuntimeError: failed to run $MAKE all-pdf in /dev/shm/portage/sci-mathematics/sage-doc-9999/work/build_doc/latex/en/thematic_tutorials

    Note: incremental documentation builds sometimes cause spurious
    error messages. To be certain that these are real errors, run
    "make doc-clean doc-uninstall" first and try again.

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kiwifb commented Feb 20, 2022

comment:13

Building html only does work.

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kiwifb commented Feb 21, 2022

comment:14

Citations are not relevant in the end I think. From thematic_tutorials.log

<vector_calc_change-1.pdf, id=1696, 462.52798pt x 346.89601pt>
File: vector_calc_change-1.pdf Graphic file (type pdf)
<use vector_calc_change-1.pdf>
Package pdftex.def Info: vector_calc_change-1.pdf  used on input line 17866.
(pdftex.def)             Requested size: 462.52684pt x 346.89516pt.
<vector_calc_change-2.pdf, id=1698, 462.52798pt x 346.89601pt>
File: vector_calc_change-2.pdf Graphic file (type pdf)
<use vector_calc_change-2.pdf>
Package pdftex.def Info: vector_calc_change-2.pdf  used on input line 17904.
(pdftex.def)             Requested size: 462.52684pt x 346.89516pt.
[246] [247 <./vector_calc_change-1.pdf>] [248 <./vector_calc_change-2.pdf>]
<vector_calc_change-3.pdf, id=1731, 462.52798pt x 346.89601pt>
File: vector_calc_change-3.pdf Graphic file (type pdf)
<use vector_calc_change-3.pdf>
Package pdftex.def Info: vector_calc_change-3.pdf  used on input line 17920.
(pdftex.def)             Requested size: 462.52684pt x 346.89516pt.

[249 <./vector_calc_change-3.pdf>] [250] [251] [252] [253] [254] [255]
! You can't use `macro parameter character #' in math mode.
l.18491 ...n the future, see the discussion at \(#
                                                  24456
? 
! Emergency stop.
l.18491 ...n the future, see the discussion at \(#
                                                  24456
End of file on the terminal!

 
Here is how much of TeX's memory you used:
 14921 strings out of 479658
 213909 string characters out of 5878930
 707354 words of memory out of 5000000
 31095 multiletter control sequences out of 15000+600000
 468261 words of font info for 90 fonts, out of 8000000 for 9000
 817 hyphenation exceptions out of 8191
 83i,29n,88p,888b,587s stack positions out of 5000i,500n,10000p,200000b,80000s
!  ==> Fatal error occurred, no output PDF file produced!

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kiwifb commented Feb 21, 2022

comment:15

OK, it looks like stuff like #ticket_number has to go. In fact from the output I saw earlier today, we need to move from :trac:`ticket/29023` to :trac:`29023`.

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sagetrac-git mannequin commented Feb 21, 2022

Changed commit from c839fe7 to ab2365c

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sagetrac-git mannequin commented Feb 21, 2022

Branch pushed to git repo; I updated commit sha1. New commits:

ab2365cremove superfluous "ticket/"

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kiwifb commented Feb 21, 2022

comment:17

I am not saying it should be the definitive form, especially in the stuff I changed in the thematic_tutorials, but it now builds both the html and the pdf without a hitch.

Pitty I am doing all that remotely, I will have to wait tomorrow to see what it looks like.

@kwankyu copying you because you care about the doc so you can give us your opinion about how it looks like after the upgrade and whether we need to improve our output.

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sagetrac-git mannequin commented Feb 22, 2022

Changed commit from 7230e35 to 7d373f0

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sagetrac-git mannequin commented Feb 22, 2022

Branch pushed to git repo; I updated commit sha1. New commits:

7d373f0fix a forgotten "ticket/" entry

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kiwifb commented Feb 22, 2022

comment:37

I am fixing the formatting of all the files in the current branch first. Then I'll see if there are any other that lurk around in the rest of sage.

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sagetrac-git mannequin commented Feb 22, 2022

Changed commit from 7d373f0 to 7c27669

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sagetrac-git mannequin commented Feb 22, 2022

Branch pushed to git repo; I updated commit sha1. New commits:

7c27669fix formatting in installation doc

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kwankyu commented Feb 22, 2022

comment:39

HTMLs and PDFs build fine on macOS.

But updated links need to be checked. I found one error:

--- a/src/sage/sat/solvers/satsolver.pyx
+++ b/src/sage/sat/solvers/satsolver.pyx
@@ -316,7 +316,7 @@ def SAT(solver=None, *args, **kwds):
     Return a :class:`SatSolver` instance.
 
     Through this class, one can define and solve `SAT
-    <https://en.wikipedia.org/wiki/Boolean_satisfiability_problem>`__ problems.
+    <:wikipedia:`Boolean_satisfiability_problem`>`__ problems.
 
     INPUT:

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kiwifb commented Feb 22, 2022

comment:40

Replying to @kwankyu:

HTMLs and PDFs build fine on macOS.

But updated links need to be checked. I found one error:

--- a/src/sage/sat/solvers/satsolver.pyx
+++ b/src/sage/sat/solvers/satsolver.pyx
@@ -316,7 +316,7 @@ def SAT(solver=None, *args, **kwds):
     Return a :class:`SatSolver` instance.
 
     Through this class, one can define and solve `SAT
-    <https://en.wikipedia.org/wiki/Boolean_satisfiability_problem>`__ problems.
+    <:wikipedia:`Boolean_satisfiability_problem`>`__ problems.
 
     INPUT:

It is still a work in progress, I'll get to that one shortly. If you spot some other weird stuff that is not coming from a file touched by this branch, I'd be glad for the report.

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comment:41

Replying to @kwankyu:

HTMLs and PDFs build fine on macOS.

But updated links need to be checked. I found one error:

--- a/src/sage/sat/solvers/satsolver.pyx
+++ b/src/sage/sat/solvers/satsolver.pyx
@@ -316,7 +316,7 @@ def SAT(solver=None, *args, **kwds):
     Return a :class:`SatSolver` instance.
 
     Through this class, one can define and solve `SAT
-    <https://en.wikipedia.org/wiki/Boolean_satisfiability_problem>`__ problems.
+    <:wikipedia:`Boolean_satisfiability_problem`>`__ problems.
 
     INPUT:

If I'm not mistaken this has been fixed:

https://github.com/sagemath/sagetrac-mirror/blob/7c2766973cc44e071270af061c80391c8fa80116/src/sage/sat/solvers/satsolver.pyx&id2=15c8011dd0b21c74f698b05ed2608f7afbec0d1a

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kiwifb commented Feb 22, 2022

comment:42

No Steve, that format is no good. I have about two more files before getting to that one.

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comment:43

Replying to @kiwifb:

No Steve, that format is no good. I have about two more files before getting to that one.

OK, I see.

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sagetrac-git mannequin commented Feb 22, 2022

Branch pushed to git repo; I updated commit sha1. New commits:

17fa6d4fix the format of all remaining extlinks already touched on the branch.

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sagetrac-git mannequin commented Feb 22, 2022

Changed commit from 7c27669 to 17fa6d4

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kiwifb commented Feb 22, 2022

comment:45

Done a build (html and pdf), but I won't be able to see the resulting documents before about 9am NZ time which is in a bit less than 13 hours.

Of particular interest are

  • src/sage/knots/knotinfo.py where the original was missing an ending " and I am not sure if it will parse properly or need to be replaced by codes.
  • src/sage/sat/solvers/satsolver.pyx where I changed slightly the caption.

Also I saw :meth: in src/sage/knots/knotinfo.py and several other files but I cannot find where it is defined. Can someone tell me more about it?

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kiwifb commented Feb 22, 2022

comment:46

Everything looks good in html and pdf. I am putting it for review.

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kwankyu commented Feb 23, 2022

comment:47

Replying to @kiwifb:

Also I saw :meth: in src/sage/knots/knotinfo.py and several other files but I cannot find where it is defined. Can someone tell me more about it?

It is a role defined in the Python domain. Hence it is defined in Sphinx. See here:

https://www.sphinx-doc.org/en/master/usage/restructuredtext/domains.html

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kwankyu commented Feb 23, 2022

comment:48

Builds fine and looks fine.

Of particular interest are

  • src/sage/knots/knotinfo.py where the original was missing an ending " and I am not sure if it will parse properly or need to be replaced by codes.

It looks fine.

  • src/sage/sat/solvers/satsolver.pyx where I changed slightly the caption.

It looks better.

Overall, I am positive on the ticket. We just need to wait for the next beta to resolve merge conflicts.

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kwankyu commented Feb 23, 2022

Reviewer: Kwankyu Lee

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kiwifb commented Feb 23, 2022

comment:50

There shouldn't be any conflict. I am testing this as is in sage-on-gentoo on Volker's merging branch (which includes #33309) and there are no conflicts. If you think a ticket will conflict with this one, I'd like to know about it.

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kwankyu commented Feb 23, 2022

comment:51

Replying to @kiwifb:

There shouldn't be any conflict. I am testing this as is in sage-on-gentoo on Volker's merging branch (which includes #33309) and there are no conflicts. If you think a ticket will conflict with this one, I'd like to know about it.

You are right. I was mistaken.

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kwankyu commented Feb 23, 2022

comment:52

Then I set this positive. Reviewers are welcome to add names.

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kiwifb commented Feb 23, 2022

comment:53

Thank you!

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vbraun commented Feb 27, 2022

Changed branch from u/fbissey/sphinx-4.4 to 17fa6d4

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